Lag0006269 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006269
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Locationchr6: 40322243 .. 40323076 (-)
RNA-Seq ExpressionLag0006269
SyntenyLag0006269
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGGTGAGGACGATCCGAACCATGGCTGAAAGATTAGAGAGAAAGAGAAATGAGAGATGGGAGAAGAGAGAAGGGAAATGGAAGGGAGATTTTTTGGGGGGCGATATTGATTTTTATTTTAAAAAAATGAGAAAAGAAAGGGGGAATCAGAGAAAATAGAAGTGGTGAGAAGGAAGAACACGTAGGCGAAGGAGGTGTTGGTGGCTTTGAGAGAAGAAGAAGAAGTAATTGTTTGGGCAAAATTGGAGTTTTGTGGAGTTGCTATTGCGTGGGTGTCTTCCTTGCTTCCATCTCTCTCTTTCTCTTTCCTATTTCCTTTGTGGAAAACAGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

mRNA sequence

ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

Coding sequence (CDS)

ATGGGGATGATAGTTGGTTCGACGGACGAAGATTTGTCTCGGAATGGGGCAGTTGGCGCTGGAGTTGCCGCAGCTGCTGCAGAACATGCGACCAGAGCCGGAGCAGGTCCGACAGCCAATGTCACCGTCAGACCAGCGGGAGCAGAGGCAAGGGACTCGACCGGTGCTGTTGCAGGAGAGGCAGCGGGGGAAGGAACCGGCCATGGGCTTTTAGTCCATGACCGATTTGATGAGAACGGCGCCGGCGAGGACGCTGAGGGGGTGGCGAGCTGGAGGGGGGCGTCGGAAAACGGAGGCTTCCTCTTTCAGTTAAAAATAAAAAAAAATAAAAAAGAAGCAGCTGAAGCTTCGAGGAAGGAAAGAAGAAGAAGAAAAGAAGGAAAAAAATATGGCGGCTGCCGCCGCTATTCGCCGGCAGTCGGCGGCGGCCGGCCACCGGAGTTAAAGAAGAAGAAGATGGGGAAGAAGGAAGATGGAGATGGGGAAGAGAAAGGAGAAGGAGAATAG

Protein sequence

MGMIVGSTDEDLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGEGTGHGLLVHDRFDENGAGEDAEGVASWRGASENGGFLFQLKIKKNKKEAAEASRKERRRRKEGKKYGGCRRYSPAVGGGRPPELKKKKMGKKEDGDGEEKGEGE
Homology
[Close]
BLAST of Lag0006269 vs. NCBI nr
Match: TYK15728.1 (chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-16
Identity = 57/85 (67.06%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 11  DLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGEGTGHGL 70
           DLS   A GAG A AAAEH TRAGAG  A+V+V PAGAE  D+  AVAG AAGEG GHGL
Sbjct: 264 DLSGKRAAGAGAATAAAEHTTRAGAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHGL 323

Query: 71  LVHDRFDENGAGEDAEGVASWRGAS 96
           +VHD FDE+GAGEDAE  A  R  S
Sbjct: 324 VVHDGFDEDGAGEDAEAEARKREES 348

[Close]
BLAST of Lag0006269 vs. NCBI nr
Match: RXH79902.1 (hypothetical protein DVH24_041049 [Malus domestica])

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-05
Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 5   VGSTDEDLSRNGAVGAGVAAAAAEHATRAGAGPTANVTVRPAGAEARDSTGAVAGEAAGE 64
           VG+   DL+R          AA +  TRAG  P  ++T+ PA AEA D T +VA   A E
Sbjct: 374 VGALYGDLNRKRPTRTRPTTAATKRTTRAGTAPAPDITIGPARAEAGDPTRSVAPGTARE 433

Query: 65  GTGHGLLVHDRFDENGAGEDAEGVASWRGASENGGFLFQ------LKIKKNKKEAAEASR 124
           G GHGLLVHDRFDE+ A +DA          E GG L Q      L    +  E  E+  
Sbjct: 434 GAGHGLLVHDRFDEDRARQDA----------ETGGELSQHDRTSHLFGDASDNEGGESRE 490

Query: 125 KERRRRK 126
           +E ++RK
Sbjct: 494 REEKKRK 490

The following BLAST results are available for this feature:
BLAST of Lag0006269 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15728.13.5e-1667.06chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa][more]
RXH79902.16.2e-0540.16hypothetical protein DVH24_041049 [Malus domestica][more]
BLAST of Lag0006269 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006269.1Lag0006269.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0034357 photosynthetic membrane
cellular_component GO:0009536 plastid