Lag0006027 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006027
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	chr6: 36141649 .. 36142143 (+)
RNA-Seq Expression	Lag0006027
Synteny	Lag0006027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCTTCTCATGGGGTTTTATTTTCCCTCATTTTCGTGCTCTTTCTCGCCCACGACGCCATTGAAGCGACCTCAATCCACGTGAGTGTTCAAAATCAAAATCCCCTTCTCTGCAAAACCCACTTCTCGAAAAATCGAAACCCCATTTGGTTTTCATTTCCCCCAAATCGATTGGTTCGATGTTCTGTTCGTGCGATTCAATGAGCTGATTGTGCGTTTCTTGTTTCTTAGGTTAATGGGTCCGATCAAGAACCGATGATGGTGCCATTGATGGAGAAGATTGAGACGTCGGCGGCGATGGTGATGAACGGTGGTCGGCGGCAACTGAAGAGCTTCCAGGTATGCGCTCTCTGCACTTGCTGCGGCGGCGCCAGAGGAATGTGCCTTCCATCGCCCTGTTGCTATGCCATAAACTGTAACATCCCTAATAGGCCCTTTGGCTTTTGCTCTTTTACTCCCAAGACCTGTAACTGCTTTGGCTGCCATATTTAA

mRNA sequence

ATGATGTCTTCTCATGGGGTTTTATTTTCCCTCATTTTCGTGCTCTTTCTCGCCCACGACGCCATTGAAGCGACCTCAATCCACGTTAATGGGTCCGATCAAGAACCGATGATGGTGCCATTGATGGAGAAGATTGAGACGTCGGCGGCGATGGTGATGAACGGTGGTCGGCGGCAACTGAAGAGCTTCCAGGTATGCGCTCTCTGCACTTGCTGCGGCGGCGCCAGAGGAATGTGCCTTCCATCGCCCTGTTGCTATGCCATAAACTGTAACATCCCTAATAGGCCCTTTGGCTTTTGCTCTTTTACTCCCAAGACCTGTAACTGCTTTGGCTGCCATATTTAA

Coding sequence (CDS)

ATGATGTCTTCTCATGGGGTTTTATTTTCCCTCATTTTCGTGCTCTTTCTCGCCCACGACGCCATTGAAGCGACCTCAATCCACGTTAATGGGTCCGATCAAGAACCGATGATGGTGCCATTGATGGAGAAGATTGAGACGTCGGCGGCGATGGTGATGAACGGTGGTCGGCGGCAACTGAAGAGCTTCCAGGTATGCGCTCTCTGCACTTGCTGCGGCGGCGCCAGAGGAATGTGCCTTCCATCGCCCTGTTGCTATGCCATAAACTGTAACATCCCTAATAGGCCCTTTGGCTTTTGCTCTTTTACTCCCAAGACCTGTAACTGCTTTGGCTGCCATATTTAA

Protein sequence

MMSSHGVLFSLIFVLFLAHDAIEATSIHVNGSDQEPMMVPLMEKIETSAAMVMNGGRRQLKSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI

Homology

[Close]

BLAST of Lag0006027 vs. NCBI nr
Match: XP_023546744.1 (uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 99/113 (87.61%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 2   MSSHGVLFSLIFVLFLAHDAIEATSIHVNGSDQEPMMVPLMEKIETSAAMVMNGGRRQLK 61
           MS +GVLFSLIF+LFLAH+AIEATSIHVN SDQEPMMVPLMEK+ET+ AMV+NGGRRQL+
Sbjct: 12  MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETT-AMVINGGRRQLR 71

Query: 62  SFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115
           SFQ+CALCTCCGGARG+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 72  SFQICALCTCCGGARGVCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 123

[Close]

BLAST of Lag0006027 vs. NCBI nr
Match: KAG6598934.1 (hypothetical protein SDJN03_08712, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 99/113 (87.61%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 2   MSSHGVLFSLIFVLFLAHDAIEATSIHVNGSDQEPMMVPLMEKIETSAAMVMNGGRRQLK 61
           MS +GVLFSLIF+LFLAH+AIEATSIHVN SDQEPMMVPLMEK+ET+ AMV+N GRRQL+
Sbjct: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETT-AMVINSGRRQLR 60

Query: 62  SFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115
           SFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112

[Close]

BLAST of Lag0006027 vs. NCBI nr
Match: KAG7029889.1 (hypothetical protein SDJN02_08232 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 99/113 (87.61%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 2   MSSHGVLFSLIFVLFLAHDAIEATSIHVNGSDQEPMMVPLMEKIETSAAMVMNGGRRQLK 61
           MS +GVLFSLIF+LFLAH+AIEATSIHVN SDQEPMMVPLMEK+ET+ AMV+N GRRQL+
Sbjct: 12  MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETT-AMVINSGRRQLR 71

Query: 62  SFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115
           SFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 72  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 123

[Close]

BLAST of Lag0006027 vs. NCBI nr
Match: XP_022965498.1 (uncharacterized protein LOC111465383 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 2   MSSHGVLFSLIFVLFLAHDAIEATSIHVN-GSDQEPMMVPLMEKIETSAAMVMNGGRRQL 61
           MS +GV+F LIFVLFLAHDAIEATS H N  SDQEPMMVPLME +ET  A+ MNG RRQL
Sbjct: 1   MSPYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 62  KSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115
           +SFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of Lag0006027 vs. NCBI nr
Match: XP_023536878.1 (uncharacterized protein LOC111798131 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 5.7e-50
Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 2   MSSHGVLFSLIFVLFLAHDAIEATSIHVN-GSDQEPMMVPLMEKIETSAAMVMNGGRRQL 61
           M  +GV+F LIFVLFLAHDAIEATS H N  SDQEPMMVPLME +ET  A+ MNG RRQL
Sbjct: 1   MLRYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 62  KSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115
           KSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  KSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

The following BLAST results are available for this feature:

BLAST of Lag0006027 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546744.1	1.6e-52	87.61	uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo]	[more]
KAG6598934.1	2.7e-52	87.61	hypothetical protein SDJN03_08712, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029889.1	2.7e-52	87.61	hypothetical protein SDJN02_08232 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965498.1	2.5e-50	85.96	uncharacterized protein LOC111465383 [Cucurbita maxima]	[more]
XP_023536878.1	5.7e-50	85.96	uncharacterized protein LOC111798131 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0006027 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 2..114
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 2..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006027.1	Lag0006027.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity