Lag0005994 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005994
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSerine/threonine-protein kinase atg1-like
Locationchr6: 35323765 .. 35324435 (+)
RNA-Seq ExpressionLag0005994
SyntenyLag0005994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACAATTTTGGTTGGGGAAATCATCCAAGTTTCTCATGGAGTGGTAATGTTGGTGCATCAAAGCTACCGTAGCAGCAAGGGAGTAATAATTTTGGCCCTCAACTCTTTAACACTAACAATGATCAAGTTTTGCAAGGACCATTTCAAGGAAACTTCCAACATGGAAATACTTCAGGCAGTGGAAAAGCTAACACAACATCATCAAACTCATTGGAGATCCTACTGAAGGATTTTATGATCAGTCAAAATGAGCATATGGCAAAGAATGACGCATTAGTGCGAAGCCAGGTTGCATCACTCAGAAACCTTAAAGTTCAACTGGGGATTTTAGCATCAGAACTGAAGAACATGCCAGTAGGAACTCTTCCAAATAGCACTGAAGCGACAAGAGGAAAAGAGCACTGCCATGCATTAACCTTGTGTGACGGTAAACAAGTTCCAAGCAATACAACTACTCATGCGCCAAAAGATGCGGTAGTAAATTCAGAAGATCCAAAGAAGTGTCTGGAAGAACCCAACCAGGCTAAATCAAGAAAGGAAGGCGCTGTGAAGGAAAAAGAAGAAGAGCCATCGGTGCATGAAGAACCTGCCGCATACAAACCACCTATTCCCTTTCTACATTTCCAACAAAAAAGAATGATAACACAAACTTCAAGAAATTTCTGA

mRNA sequence

ATGCCTACAATTTTGGTTGGGGAAATCATCCAAGTTTCTCATGGAGTGGTAATGTTGGTGCATCAAAGCTACCGCAGTGGAAAAGCTAACACAACATCATCAAACTCATTGGAGATCCTACTGAAGGATTTTATGATCAGTCAAAATGAGCATATGGCAAAGAATGACGCATTAGTGCGAAGCCAGGTTGCATCACTCAGAAACCTTAAAGTTCAACTGGGGATTTTAGCATCAGAACTGAAGAACATGCCAGTAGGAACTCTTCCAAATAGCACTGAAGCGACAAGAGGAAAAGAGCACTGCCATGCATTAACCTTGTGTGACGGTAAACAAGTTCCAAGCAATACAACTACTCATGCGCCAAAAGATGCGGTAGTAAATTCAGAAGATCCAAAGAAGTGTCTGGAAGAACCCAACCAGGCTAAATCAAGAAAGGAAGGCGCTGTGAAGGAAAAAGAAGAAGAGCCATCGGTGCATGAAGAACCTGCCGCATACAAACCACCTATTCCCTTTCTACATTTCCAACAAAAAAGAATGATAACACAAACTTCAAGAAATTTCTGA

Coding sequence (CDS)

ATGCCTACAATTTTGGTTGGGGAAATCATCCAAGTTTCTCATGGAGTGGTAATGTTGGTGCATCAAAGCTACCGCAGTGGAAAAGCTAACACAACATCATCAAACTCATTGGAGATCCTACTGAAGGATTTTATGATCAGTCAAAATGAGCATATGGCAAAGAATGACGCATTAGTGCGAAGCCAGGTTGCATCACTCAGAAACCTTAAAGTTCAACTGGGGATTTTAGCATCAGAACTGAAGAACATGCCAGTAGGAACTCTTCCAAATAGCACTGAAGCGACAAGAGGAAAAGAGCACTGCCATGCATTAACCTTGTGTGACGGTAAACAAGTTCCAAGCAATACAACTACTCATGCGCCAAAAGATGCGGTAGTAAATTCAGAAGATCCAAAGAAGTGTCTGGAAGAACCCAACCAGGCTAAATCAAGAAAGGAAGGCGCTGTGAAGGAAAAAGAAGAAGAGCCATCGGTGCATGAAGAACCTGCCGCATACAAACCACCTATTCCCTTTCTACATTTCCAACAAAAAAGAATGATAACACAAACTTCAAGAAATTTCTGA

Protein sequence

MPTILVGEIIQVSHGVVMLVHQSYRSGKANTTSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELKNMPVGTLPNSTEATRGKEHCHALTLCDGKQVPSNTTTHAPKDAVVNSEDPKKCLEEPNQAKSRKEGAVKEKEEEPSVHEEPAAYKPPIPFLHFQQKRMITQTSRNF
Homology
BLAST of Lag0005994 vs. NCBI nr
Match: XP_030509134.1 (uncharacterized protein LOC115723804 [Cannabis sativa])

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-14
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 0

Query: 32  TSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELKNMPVGTLPNS 91
           + ++SLE L++D+       MAKNDA+++SQ ASLRNL+VQLG LA++LKN P GTLP+ 
Sbjct: 118 SQTSSLESLMRDY-------MAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSD 177

Query: 92  TEATR--GKEHCHALTLCDGKQVPSNTTTHAPKDAVVNSEDPKKCLEEPNQAKSRKEGAV 151
           T+  R  GKEHC A+TL  GK + SN      K+    S   K+   + NQ  S      
Sbjct: 178 TKNPRRDGKEHCKAVTLRSGKIIESNVAATGSKEP---SSIQKEGEMKKNQTTSVNLKFP 237

Query: 152 KEKEEEPSVHEEPAAYKPPIPF 172
           K  E+     +E +  KPP+PF
Sbjct: 238 KSSEDPTRFSQEKSLQKPPLPF 249

BLAST of Lag0005994 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-14
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 22  QSYRSGKANTTSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELK 81
           Q  RS +   + ++SLE L++D+       MAKNDA+++SQ ASLRNL+VQLG LA++LK
Sbjct: 306 QQPRSHQPQGSQTSSLESLMRDY-------MAKNDAVIQSQAASLRNLEVQLGQLANDLK 365

Query: 82  NMPVGTLPNSTEATR--GKEHCHALTLCDGKQVPSNTTTHA 121
           N P GTLP+ TE  R  GKEHC A+TL  GK + SN   ++
Sbjct: 366 NRPQGTLPSDTENPRRDGKEHCKAITLRSGKILESNVVCNS 399

BLAST of Lag0005994 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 32  TSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELKNMPVGTLPNS 91
           + ++SLE L++D+       MAKNDA+++SQ ASLRNL+VQLG LA++LKN P GTLP+ 
Sbjct: 385 SQTSSLESLMRDY-------MAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSD 444

Query: 92  TEATR--GKEHCHALTLCDGKQVPSNTTTHAPKD--------------AVVNSEDPKKCL 146
           TE  R  GKEHC A+TL  GK + SN      K+              A  NSE P++ L
Sbjct: 445 TENPRRDGKEHCKAVTLRSGKIIESNVAATGSKEPSSIQKEGEMKKKPATSNSEIPREIL 504

BLAST of Lag0005994 vs. NCBI nr
Match: XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa])

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-13
Identity = 60/146 (41.10%), Postives = 82/146 (56.16%), Query Frame = 0

Query: 32  TSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELKNMPVGTLPNS 91
           + ++SLE L++D+       MAKNDA+++SQ ASLRNL+VQLG LA++LKN P GTLP+ 
Sbjct: 339 SQTSSLESLMRDY-------MAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSD 398

Query: 92  TEATR--GKEHCHALTLCDGKQVPSNTTTHAPKDAVVNSEDPKKCLEEPNQAKSRKEGAV 151
           TE  R  GKEHC A+TL  GK + SN        A   S++P    +E    K     A 
Sbjct: 399 TENPRRDGKEHCKAVTLRSGKIIESNV-------AAKGSKEPSSIQKEGEMKKKPATSAA 458

Query: 152 KEKEE----EPSVHEEPAAYKPPIPF 172
           +  +E       +       KPP+PF
Sbjct: 459 EIPQELQRSNKILCRRKPLQKPPLPF 470

BLAST of Lag0005994 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = 0

Query: 32  TSSNSLEILLKDFMISQNEHMAKNDALVRSQVASLRNLKVQLGILASELKNMPVGTLPNS 91
           + ++SLE L++D+       MAKND +++SQ ASLRNL+VQLG LA++LKN P GTLP+ 
Sbjct: 366 SQTSSLESLMRDY-------MAKNDTVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSD 425

Query: 92  TEATR--GKEHCHALTLCDGKQVPSNTTTHAPKDAVVNSEDPKKCLEEPNQAKSRKEGAV 151
           TE  R  GKEHC A+TL  GK + SN        A   S++P    +E    K     AV
Sbjct: 426 TENPRRDGKEHCKAVTLRSGKIIESNV-------AATRSKEPSSIQKEGEMKKKPATSAV 485

Query: 152 KEKEEEPSVHEEPAA----YKPPIPF 172
           +      +  +  AA     KPP PF
Sbjct: 486 EIPPVVTASSQHSAAEKSLQKPPPPF 497

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030509134.12.2e-1442.96uncharacterized protein LOC115723804 [Cannabis sativa][more]
XP_030507648.13.7e-1450.50uncharacterized protein LOC115722545 [Cannabis sativa][more]
XP_030509259.12.4e-1343.85uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_030503898.15.3e-1341.10uncharacterized protein LOC115719117 [Cannabis sativa][more]
XP_030497803.16.9e-1341.78uncharacterized protein LOC115713460 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005994.1Lag0005994.1mRNA