Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAGTCAAATTAGCCACATTACTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAATCTATTTTTAGCCAGGCGCAGTGATGCACGTACGTTAGATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTTGAGAGAGGGTTGCGTTTTGAGATACGTACCACAATTACTGCTGTGTTGTGTTTCATGTAGAATGTTTTATATCTATGGTTAGTATGTTCATCAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA
mRNA sequence
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA
Coding sequence (CDS)
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA
Protein sequence
MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKIGRHSEAYLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRFNDSVGSTGVVRGDEDCWLHAIFRAKLAGGLGGGVTIGLKTYNLFFMFP
Homology
BLAST of Lag0005531 vs. NCBI nr
Match:
XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])
HSP 1 Score: 225.3 bits (573), Expect = 5.0e-55
Identity = 129/200 (64.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRRRRQNQDG Q TQ QSERGSSTPRGQNE S+RFARSAQEISR +RA PSD
Sbjct: 1 MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 60
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKI-------GRHSE 120
+KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVMSC +EQK+ + +E
Sbjct: 61 DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAE 120
Query: 121 AYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
+L+ + P AKRDEF+ELKQGSL VAEYERKYT
Sbjct: 121 GWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYT 180
BLAST of Lag0005531 vs. NCBI nr
Match:
TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPP TS+RRR NQDG Q TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221
Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
I R ++A T P AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281
BLAST of Lag0005531 vs. NCBI nr
Match:
KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPP TS+RRR NQDG Q TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221
Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
I R ++A T P AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281
BLAST of Lag0005531 vs. NCBI nr
Match:
XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])
HSP 1 Score: 222.2 bits (565), Expect = 4.3e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD
Sbjct: 1 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K
Sbjct: 61 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 120
Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
I R ++A + P AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 121 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 180
BLAST of Lag0005531 vs. NCBI nr
Match:
TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 222.2 bits (565), Expect = 4.3e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 224
Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
I R ++A + P AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 225 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 284
BLAST of Lag0005531 vs. ExPASy TrEMBL
Match:
A0A1S4DV40 (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55
Identity = 129/200 (64.50%), Postives = 144/200 (72.00%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRRRRQNQDG Q TQ QSERGSSTPRGQNE S+RFARSAQEISR +RA PSD
Sbjct: 1 MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 60
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKI-------GRHSE 120
+KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVMSC +EQK+ + +E
Sbjct: 61 DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAE 120
Query: 121 AYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
+L+ + P AKRDEF+ELKQGSL VAEYERKYT
Sbjct: 121 GWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYT 180
BLAST of Lag0005531 vs. ExPASy TrEMBL
Match:
A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPP TS+RRR NQDG Q TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221
Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
I R ++A T P AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281
BLAST of Lag0005531 vs. ExPASy TrEMBL
Match:
A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPP TS+RRR NQDG Q TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221
Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
I R ++A T P AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281
BLAST of Lag0005531 vs. ExPASy TrEMBL
Match:
A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 224
Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
I R ++A + P AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 225 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 284
BLAST of Lag0005531 vs. ExPASy TrEMBL
Match:
A0A1S3BJ07 (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query: 1 MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD
Sbjct: 1 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60
Query: 61 EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K
Sbjct: 61 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 120
Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
I R ++A + P AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 121 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_016899851.1 | 5.0e-55 | 64.50 | PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo] | [more] |
TYK27998.1 | 3.3e-54 | 62.21 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0066851.1 | 3.3e-54 | 62.21 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
XP_008448403.1 | 4.3e-54 | 64.50 | PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo] | [more] |
TYK01041.1 | 4.3e-54 | 64.50 | uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S4DV40 | 2.4e-55 | 64.50 | uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... | [more] |
A0A5D3DX39 | 1.6e-54 | 62.21 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... | [more] |
A0A5A7VMG9 | 1.6e-54 | 62.21 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
A0A5D3BMJ4 | 2.1e-54 | 64.50 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A1S3BJ07 | 2.1e-54 | 64.50 | uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... | [more] |
Match Name | E-value | Identity | Description | |