Lag0005531 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005531
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 20798023 .. 20798869 (+)
RNA-Seq ExpressionLag0005531
SyntenyLag0005531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAGTCAAATTAGCCACATTACTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAATCTATTTTTAGCCAGGCGCAGTGATGCACGTACGTTAGATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTTGAGAGAGGGTTGCGTTTTGAGATACGTACCACAATTACTGCTGTGTTGTGTTTCATGTAGAATGTTTTATATCTATGGTTAGTATGTTCATCAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA

mRNA sequence

ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA

Coding sequence (CDS)

ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTGACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA

Protein sequence

MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKIGRHSEAYLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRFNDSVGSTGVVRGDEDCWLHAIFRAKLAGGLGGGVTIGLKTYNLFFMFP
Homology
BLAST of Lag0005531 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 5.0e-55
Identity = 129/200 (64.50%), Postives = 144/200 (72.00%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRRRRQNQDG Q  TQ QSERGSSTPRGQNE  S+RFARSAQEISR +RA PSD 
Sbjct: 1   MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 60

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKI-------GRHSE 120
           +KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVMSC +EQK+        + +E
Sbjct: 61  DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAE 120

Query: 121 AYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
            +L+                      +   P     AKRDEF+ELKQGSL VAEYERKYT
Sbjct: 121 GWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYT 180

BLAST of Lag0005531 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD 
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K             
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221

Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
                 I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281

BLAST of Lag0005531 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD 
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K             
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221

Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
                 I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281

BLAST of Lag0005531 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 4.3e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD 
Sbjct: 1   MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K             
Sbjct: 61  EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 120

Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
                 I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 121 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 180

BLAST of Lag0005531 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 4.3e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD 
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K             
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 224

Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
                 I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 225 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 284

BLAST of Lag0005531 vs. ExPASy TrEMBL
Match: A0A1S4DV40 (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55
Identity = 129/200 (64.50%), Postives = 144/200 (72.00%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRRRRQNQDG Q  TQ QSERGSSTPRGQNE  S+RFARSAQEISR +RA PSD 
Sbjct: 1   MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 60

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKI-------GRHSE 120
           +KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVMSC +EQK+        + +E
Sbjct: 61  DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAE 120

Query: 121 AYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
            +L+                      +   P     AKRDEF+ELKQGSL VAEYERKYT
Sbjct: 121 GWLKSIIASRNDARTLYWQTFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYT 180

BLAST of Lag0005531 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD 
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K             
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221

Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
                 I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281

BLAST of Lag0005531 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 135/217 (62.21%), Postives = 147/217 (67.74%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD 
Sbjct: 102 MPPPTSKRRRPNQDGMQYPTQGQSERGSSTPRGQNEVESERFARSAQEISRPERARPSDP 161

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVMSC +E+K             
Sbjct: 162 EKMYGIERLKKLGATVFEGSTDPADTKVWLNMLEKCFDVMSCLQERKVRLATFLLQKEAE 221

Query: 121 ------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYT 180
                 I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT
Sbjct: 222 GWWKSIIARRNDARTLDWQTFRGIFDEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYT 281

BLAST of Lag0005531 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD 
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K             
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 224

Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
                 I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 225 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 284

BLAST of Lag0005531 vs. ExPASy TrEMBL
Match: A0A1S3BJ07 (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 129/200 (64.50%), Postives = 141/200 (70.50%), Query Frame = 0

Query: 1   MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDS 60
           MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD 
Sbjct: 1   MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60

Query: 61  EKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQK------------- 120
           EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM+C +++K             
Sbjct: 61  EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAE 120

Query: 121 ------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYT 172
                 I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYT
Sbjct: 121 GWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYT 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016899851.15.0e-5564.50PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
TYK27998.13.3e-5462.21reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.13.3e-5462.21reverse transcriptase [Cucumis melo var. makuwa][more]
XP_008448403.14.3e-5464.50PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
TYK01041.14.3e-5464.50uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4DV402.4e-5564.50uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
A0A5D3DX391.6e-5462.21Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.6e-5462.21Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3BMJ42.1e-5464.50Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BJ072.1e-5464.50uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..62
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 90..174
NoneNo IPR availablePANTHERPTHR34482:SF4POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATEDcoord: 90..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005531.1Lag0005531.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity