Lag0005528 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005528
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr6: 20655970 .. 20656851 (+)
RNA-Seq Expression	Lag0005528
Synteny	Lag0005528

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGATACTCGGTATTACCTACCGTTTTATATTACTTGTGACGACCCGTGCACTTGCGGTGTAAAAGCGGTAATCACCCAACACCTGTCAAAGACTGTCAATGATGCAAAGGAGCTATTAGAGGAAATAGCATCCACAAGTTATCAATGGCCCACAGAGAGGGCACCAATGAAGAAGGCTAGAATATATGAGCTAGATAATTCAAGTTCTTGAAAGCGCAGATGGCTTCCTTGATAAGCGCCCTAACAAGCTTTCATCTTCAGAGGTGGTGAAATCAATTGTCGCCTTAGCTAAGAGCCATTCAAAGAAGGAAGAAGAGGTAGAGCAAGTTCAATTCAAAGGCAACAGAGGATTCAATTAGAATCAGAATCTGTTGAACTTCTACCACCCAGGTTTGCATAATCACGAAAATTTTTCTTATGCTAACTCGAAAAATGTTTTGCAGCCACCCCCAAGTTTTGCATCCACATCAAATTCCCAAGAGAAGAAAAGTAAACTGGAGGAAATGGTGGCGGTCTTCATCAAAGAACAAAAAGTCTTGAATGTCAATCTCTAGACCACTGTGAACACTCTGGTAAATTCGGTGAATAACCATGACGTTGCTCTAAAGAACATGGAGGTCCAGCTAGGACAGATCGCGACTGCAGTAAATGTCCTTCAGAAAGGTAAGTTCTCCAGCGACACGGAGGTAAATCCAAGAGAGCAATGCAAGGTCATCACGTTTCGGAGTGGGACTCAGTTGAAGAGTCCAATGGATGAAGAGCAGAAGAAGGAAGAAAGAAAGAGCAAGGATGAAAATGGAGGGGCTAAGGCAGAAAAAACCTCCACAGAATGGTCCCAAAATCCTCCTAGCTCGTTTGATTTTGTTTTTTTCTAA

mRNA sequence

ATGAATTCGATACTCGATGGCTTCCTTGATAAGCGCCCTAACAAGCTTTCATCTTCAGAGGTGGTGAAATCAATTGTCGCCTTAGCTAAGAGCCATTCAAAGAAGGAAGAAGAGACCACTGTGAACACTCTGGTAAATTCGGTGAATAACCATGACGTTGCTCTAAAGAACATGGAGGTCCAGCTAGGACAGATCGCGACTGCAGTAAATGTCCTTCAGAAAGGTAAGTTCTCCAGCGACACGGAGGTAAATCCAAGAGAGCAATGCAAGGTCATCACGTTTCGGAGTGGGACTCAGTTGAAGAGTCCAATGGATGAAGAGCAGAAGAAGGAAGAAAGAAAGAGCAAGGATGAAAATGGAGGGGCTAAGGCAGAAAAAACCTCCACAGAATGGTCCCAAAATCCTCCTAGCTCGTTTGATTTTGTTTTTTTCTAA

Coding sequence (CDS)

ATGAATTCGATACTCGATGGCTTCCTTGATAAGCGCCCTAACAAGCTTTCATCTTCAGAGGTGGTGAAATCAATTGTCGCCTTAGCTAAGAGCCATTCAAAGAAGGAAGAAGAGACCACTGTGAACACTCTGGTAAATTCGGTGAATAACCATGACGTTGCTCTAAAGAACATGGAGGTCCAGCTAGGACAGATCGCGACTGCAGTAAATGTCCTTCAGAAAGGTAAGTTCTCCAGCGACACGGAGGTAAATCCAAGAGAGCAATGCAAGGTCATCACGTTTCGGAGTGGGACTCAGTTGAAGAGTCCAATGGATGAAGAGCAGAAGAAGGAAGAAAGAAAGAGCAAGGATGAAAATGGAGGGGCTAAGGCAGAAAAAACCTCCACAGAATGGTCCCAAAATCCTCCTAGCTCGTTTGATTTTGTTTTTTTCTAA

Protein sequence

MNSILDGFLDKRPNKLSSSEVVKSIVALAKSHSKKEEETTVNTLVNSVNNHDVALKNMEVQLGQIATAVNVLQKGKFSSDTEVNPREQCKVITFRSGTQLKSPMDEEQKKEERKSKDENGGAKAEKTSTEWSQNPPSSFDFVFF

Homology

[Close]

BLAST of Lag0005528 vs. NCBI nr
Match: XP_022159119.1 (uncharacterized protein LOC111025551 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 8.5e-11
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 48  VNNHDVALKNMEVQLGQIATAVNVLQKGKFSSDTEVNPREQCKVITFRSGTQLKSPMDEE 107
           +  +  A+KNMEVQ+GQ+A+ +N++QKGKF SDTEVNPRE CK +T RSG +L+ P  ++
Sbjct: 5   LEGNTTAIKNMEVQIGQMASTLNIMQKGKFPSDTEVNPREHCKAVTLRSGKELQEPEKKK 64

Query: 108 QKK-----EERKSKDENGGAKAEKTSTEWSQNPPSS 139
            ++     EER++K+E      E T T  +  P SS
Sbjct: 65  MEEPVITTEERENKEE---VVKEATPTLQADKPTSS 97

[Close]

BLAST of Lag0005528 vs. NCBI nr
Match: XP_035539656.1 (uncharacterized protein LOC118344026 [Juglans regia])

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-10
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 10  DKRPN--KLSSSEVVKSIVALAKSHSKKEEETTVNTLVNSVNNHDVALKNMEVQLGQIAT 69
           D +P+  K+S  + + S V    +  KK  ++ ++ +    +N   A+KN+EVQ+GQ+AT
Sbjct: 175 DSQPSEKKISLEDAMVSFVEETNTRFKK-TDSRLDNIETHCSNMGAAIKNIEVQIGQLAT 234

Query: 70  AVNVLQKGKFSSDTEVNPREQCKVITFRSGTQL-KSPMDE 107
            +N  Q+G F S+TEVNPREQCK IT RSG +L +SP +E
Sbjct: 235 TINAQQRGTFPSNTEVNPREQCKAITLRSGRELDRSPSNE 273

[Close]

BLAST of Lag0005528 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-09
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 38  ETTVNTLVNSVNNHDVALKNMEVQLGQIATAVNVLQKGKFSSDTEVNPREQCKVITFRSG 97
           E  V  +   +  +  ++KNMEVQ+GQIA  +N +QKGKF SD EV PRE CK +T RSG
Sbjct: 310 ENQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPREHCKAVTLRSG 369

Query: 98  TQLKSPMDEEQKK-----EERKSKDE-----NGGAKAEKTSTEWSQNPPSSFDF 142
            +L+ P  ++ ++     EER++K+E         +A+K ++    +PP+S  +
Sbjct: 370 KELQEPEKKKMEEPVITTEERENKEEVVKEATPALQADKPTSSIVSSPPNSLPY 423

[Close]

BLAST of Lag0005528 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-09
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 10  DKRPN--KLSSSEVVKSIVALAKSHSKKEEETTVNTLVNSVNNHDVALKNMEVQLGQIAT 69
           D +P+  K+S  + + S V    +  KK  ++ ++ +    +N   A+KN+EVQ+GQ+AT
Sbjct: 360 DSQPSERKMSLEDAMVSFVQETNARFKK-TDSRLDNIETHCSNMGAAIKNIEVQIGQLAT 419

Query: 70  AVNVLQKGKFSSDTEVNPREQCKVITFRSGTQL-KSPMDEEQ 109
            +N  Q+G F S+TEVNP+EQCK IT RSG ++ +SP+ E +
Sbjct: 420 TINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIERSPLKESK 460

[Close]

BLAST of Lag0005528 vs. NCBI nr
Match: XP_041011488.1 (uncharacterized protein LOC121255284 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-09
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 15  KLSSSEVVKSIVALAKSHSKKEEETTVNTLVNSVNNHDVALKNMEVQLGQIATAVNVLQK 74
           K+S  + + S V  A +  KK  ++ ++ +    +N   A+KN+EVQ+ Q+AT +N  Q+
Sbjct: 220 KMSLEDAMVSFVEEANARFKK-TDSRLDNIETHCSNMGAAIKNIEVQIRQLATTINAQQR 279

Query: 75  GKFSSDTEVNPREQCKVITFRSGTQLKSPMDEEQK 110
           G F S+TEVNP+EQCK IT RSG +++ P  +E K
Sbjct: 280 GTFPSNTEVNPKEQCKAITLRSGKEIERPPSKETK 313

The following BLAST results are available for this feature:

BLAST of Lag0005528 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159119.1	8.5e-11	45.83	uncharacterized protein LOC111025551 [Momordica charantia]	[more]
XP_035539656.1	9.4e-10	43.00	uncharacterized protein LOC118344026 [Juglans regia]	[more]
XP_022157708.1	3.6e-09	37.72	uncharacterized protein LOC111024361 [Momordica charantia]	[more]
KAG7990634.1	3.6e-09	40.20	hypothetical protein I3843_02G035100 [Carya illinoinensis]	[more]
XP_041011488.1	3.6e-09	41.05	uncharacterized protein LOC121255284 [Juglans microcarpa x Juglans regia]	[more]

BLAST of Lag0005528 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005528.1	Lag0005528.1	mRNA