Lag0005265 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005265
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag protease polyprotein
Location	chr6: 13012278 .. 13012616 (-)
RNA-Seq Expression	Lag0005265
Synteny	Lag0005265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGGGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACCCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGAGAAGAGGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAAAATGAAGATGTGATGAAAAATGAAAAGATCACTAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAATCCTTTGTTACTGTCGATACGGATGGTTCCTTGAAGGTAAAGTGA

mRNA sequence

ATGCCTATTGGGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACCCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGAGAAGAGGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAAAATGAAGATGTGATGAAAAATGAAAAGATCACTAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAATCCTTTGTTACTGTCGATACGGATGGTTCCTTGAAGGTAAAGTGA

Coding sequence (CDS)

ATGCCTATTGGGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACCCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGAGAAGAGGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAAAATGAAGATGTGATGAAAAATGAAAAGATCACTAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAATCCTTTGTTACTGTCGATACGGATGGTTCCTTGAAGGTAAAGTGA

Protein sequence

MPIGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSASSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK

Homology

[Close]

BLAST of Lag0005265 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3    IGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 62
            I ++ +  ST + TR SAFQRLN    +  S   TP  TR S F+RLSV+  RD+K+ S 
Sbjct: 1118 IAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTP-TTRKSAFKRLSVSVTRDQKKASM 1177

Query: 63   SSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK 113
            S          V     +   D EIRSA PSRMKRK FV+V+T+GSLKVK
Sbjct: 1178 S----------VSNKSSLVTGDEEIRSAFPSRMKRKMFVSVNTEGSLKVK 1216

[Close]

BLAST of Lag0005265 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3    IGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 62
            I ++ +  ST + TR SAFQRLN    +  S   TP  TR S F+RLSV+  RD+K+ S 
Sbjct: 1140 IAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTP-TTRKSAFKRLSVSVTRDQKKASM 1199

Query: 63   SSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK 113
            S          V     +   D EIRSA PSRMKRK FV+V+T+GSLKVK
Sbjct: 1200 S----------VSNKSSLVTGDEEIRSAFPSRMKRKMFVSVNTEGSLKVK 1238

[Close]

BLAST of Lag0005265 vs. NCBI nr
Match: TYK06199.1 (uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3   IGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 62
           I ++ +  ST + TR SAFQRLN    +  S   TP  TR S F+RLSV+  RD+K+ S 
Sbjct: 895 IAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTP-TTRKSAFKRLSVSVTRDQKKASM 954

Query: 63  SSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK 113
           S          V     +   D EIRSA PSRMKRK FV+V+T+GSLKVK
Sbjct: 955 S----------VSNKSSLVTGDEEIRSAFPSRMKRKMFVSVNTEGSLKVK 993

[Close]

BLAST of Lag0005265 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3    IGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 62
            I ++ +  ST + TR SAFQRLN    +  S   TP  TR S F+RLSV+  RD+K+ S 
Sbjct: 1070 IAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTP-TTRKSAFKRLSVSVTRDQKKASM 1129

Query: 63   SSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK 113
            S          V     +   D EIRSA PSRMKRK FV+V+T+GSLKVK
Sbjct: 1130 S----------VSNKSSLVTGDEEIRSAFPSRMKRKMFVSVNTEGSLKVK 1168

[Close]

BLAST of Lag0005265 vs. NCBI nr
Match: KAA0031753.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3   IGEEESTFSTLNVTRPSAFQRLNMPIGEEESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 62
           I ++ +  ST + TR SAFQRLN    +  S   TP  TR S F+RLSV+  RD+K+ S 
Sbjct: 460 IAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTP-TTRKSAFKRLSVSVTRDQKKASM 519

Query: 63  SSISHRLQNEDVMKNEKITKADGEIRSAVPSRMKRKSFVTVDTDGSLKVK 113
           S          V     +   D EIRSA PSRMKRK FV+V+T+GSLKVK
Sbjct: 520 S----------VSNKSSLVTGDEEIRSAFPSRMKRKMFVSVNTEGSLKVK 558

The following BLAST results are available for this feature:

BLAST of Lag0005265 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98225.1	2.3e-11	47.27	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	2.3e-11	47.27	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK06199.1	2.3e-11	47.27	uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]	[more]
TYK18071.1	2.3e-11	47.27	uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]	[more]
KAA0031753.1	2.3e-11	47.27	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0005265 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005265.1	Lag0005265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity