Lag0004969 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0004969
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Locationchr6: 9121591 .. 9122139 (-)
RNA-Seq ExpressionLag0004969
SyntenyLag0004969
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACATCTAATGGATCTGCTCTAAATGCTTCACTAGATACAGCCATTCGGGAACCGGATACTCTGAAATTTCCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCTGGGTCTGAATCTGATGATTCAGATTGGTCGATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCTTGTTATGGACGCATTTATAATGATTTTGTGGACGAAACTAAGAACAGTATCCTTAGTGCTGTTGGAAACATCAACGATAGCTTTTCTGCCGGTAAGATTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCTTGTTTGTTTTTATTGCTTCGCCTTCCGAAATATTCTTCTAG

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACATCTAATGGATCTGCTCTAAATGCTTCACTAGATACAGCCATTCGGGAACCGGATACTCTGAAATTTCCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCTGGGTCTGAATCTGATGATTCAGATTGGTCGATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCTTGTTATGGACGCATTTATAATGATTTTGTGGACGAAACTAAGAACAGTATCCTTAGTGCTGTTGGAAACATCAACGATAGCTTTTCTGCCGGTAAGATTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCTTGTTTGTTTTTATTGCTTCGCCTTCCGAAATATTCTTCTAG

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACATCTAATGGATCTGCTCTAAATGCTTCACTAGATACAGCCATTCGGGAACCGGATACTCTGAAATTTCCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCTGGGTCTGAATCTGATGATTCAGATTGGTCGATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCTTGTTATGGACGCATTTATAATGATTTTGTGGACGAAACTAAGAACAGTATCCTTAGTGCTGTTGGAAACATCAACGATAGCTTTTCTGCCGGTAAGATTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCTTGTTTGTTTTTATTGCTTCGCCTTCCGAAATATTCTTCTAG

Protein sequence

MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLHFDWCCLFVFIASPSEIFF
Homology
[Close]
BLAST of Lag0004969 vs. NCBI nr
Match: KAA0065096.1 (Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 5.1e-85
Identity = 157/165 (95.15%), Postives = 161/165 (97.58%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD++DNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLH 165
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK CFFSSLH
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH 165

[Close]
BLAST of Lag0004969 vs. NCBI nr
Match: KAG7020253.1 (hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+TDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFF 161
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGK CFF
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFF 160

[Close]
BLAST of Lag0004969 vs. NCBI nr
Match: XP_023001877.1 (uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001878.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001879.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001880.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023536720.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo] >XP_023536721.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo] >XP_023536722.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 1.7e-80
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+TDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSA 154

[Close]
BLAST of Lag0004969 vs. NCBI nr
Match: XP_022951746.1 (uncharacterized protein LOC111454487 [Cucurbita moschata] >XP_022951747.1 uncharacterized protein LOC111454487 [Cucurbita moschata])

HSP 1 Score: 308.9 bits (790), Expect = 2.9e-80
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+TDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSA 154

[Close]
BLAST of Lag0004969 vs. NCBI nr
Match: KAG6585342.1 (hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDTDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGF SDD+TDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFHSDDETDNSFA 120

Query: 121 VLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSA 154

The following BLAST results are available for this feature:
BLAST of Lag0004969 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065096.15.1e-8595.15Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa][more]
KAG7020253.11.2e-8394.38hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023001877.11.7e-8094.81uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001878.1 uncharac... [more]
XP_022951746.12.9e-8094.81uncharacterized protein LOC111454487 [Cucurbita moschata] >XP_022951747.1 unchar... [more]
KAG6585342.11.1e-7994.16hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0004969 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..156
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0004969.1Lag0004969.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity