Lag0002876 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002876
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionethylene-responsive transcription factor ERF084
Locationchr4: 46414456 .. 46415031 (-)
RNA-Seq ExpressionLag0002876
SyntenyLag0002876
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCCGATCAGCCAATTCACTCTCTCTACAAAGCCTACTTCCAAACCCAATTCTCCCACTCTCCCTCGCCGGAATTCCAGCTCGACGGAATCGCCGCCGTCGTCGGCTGGAAAGTCCTCTTCGGCGACATCCCACCCTCAGCCAGCGCCTCGATGCCGGCGGTGACGACGGGGCAGAGAAGTTACAGAGGAGTCCGAAAGCGGCCGTGGGGGCGGTGGTCGGCGGAGATACGTGACAGAATCGGACGGTGCCGGCACTGGCTAGGAACATTCGACACGGCGGAGGAGGCAGCGCGTGCGTACGACGCAGCGGCGAGGCGGATGAGAGGATCGAAGGCCCGAACGAACTTCGAAATGCCGTTGGTGGTCCCGGTTGAATCCACGTCATCGTCGTCCACGTCATCAGGGAAAGCGAAAAGGAATCGTAGTAACTGTAATCCGTCGAAGAAGGTGGCGAAGAAAACTGGACGGCAATGTTCGGTGGTTACATCGGCGGCGCATCTGTTCAGTCCGGGGATGGAGCTTGATTTGAAACTGGGAGTTGACTTTGTCAACGGTGGTCAAAGCACATGA

mRNA sequence

ATGTTTTCCGATCAGCCAATTCACTCTCTCTACAAAGCCTACTTCCAAACCCAATTCTCCCACTCTCCCTCGCCGGAATTCCAGCTCGACGGAATCGCCGCCGTCGTCGGCTGGAAAGTCCTCTTCGGCGACATCCCACCCTCAGCCAGCGCCTCGATGCCGGCGGTGACGACGGGGCAGAGAAGTTACAGAGGAGTCCGAAAGCGGCCGTGGGGGCGGTGGTCGGCGGAGATACGTGACAGAATCGGACGGTGCCGGCACTGGCTAGGAACATTCGACACGGCGGAGGAGGCAGCGCGTGCGTACGACGCAGCGGCGAGGCGGATGAGAGGATCGAAGGCCCGAACGAACTTCGAAATGCCGTTGGTGGTCCCGGTTGAATCCACGTCATCGTCGTCCACGTCATCAGGGAAAGCGAAAAGGAATCGTAGTAACTGTAATCCGTCGAAGAAGGTGGCGAAGAAAACTGGACGGCAATGTTCGGTGGTTACATCGGCGGCGCATCTGTTCAGTCCGGGGATGGAGCTTGATTTGAAACTGGGAGTTGACTTTGTCAACGGTGGTCAAAGCACATGA

Coding sequence (CDS)

ATGTTTTCCGATCAGCCAATTCACTCTCTCTACAAAGCCTACTTCCAAACCCAATTCTCCCACTCTCCCTCGCCGGAATTCCAGCTCGACGGAATCGCCGCCGTCGTCGGCTGGAAAGTCCTCTTCGGCGACATCCCACCCTCAGCCAGCGCCTCGATGCCGGCGGTGACGACGGGGCAGAGAAGTTACAGAGGAGTCCGAAAGCGGCCGTGGGGGCGGTGGTCGGCGGAGATACGTGACAGAATCGGACGGTGCCGGCACTGGCTAGGAACATTCGACACGGCGGAGGAGGCAGCGCGTGCGTACGACGCAGCGGCGAGGCGGATGAGAGGATCGAAGGCCCGAACGAACTTCGAAATGCCGTTGGTGGTCCCGGTTGAATCCACGTCATCGTCGTCCACGTCATCAGGGAAAGCGAAAAGGAATCGTAGTAACTGTAATCCGTCGAAGAAGGTGGCGAAGAAAACTGGACGGCAATGTTCGGTGGTTACATCGGCGGCGCATCTGTTCAGTCCGGGGATGGAGCTTGATTTGAAACTGGGAGTTGACTTTGTCAACGGTGGTCAAAGCACATGA

Protein sequence

MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGDIPPSASASMPAVTTGQRSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEMPLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGMELDLKLGVDFVNGGQST
Homology
[Close]
BLAST of Lag0002876 vs. NCBI nr
Match: KAG6593374.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025723.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.8 bits (782), Expect = 2.6e-79
Identity = 155/190 (81.58%), Postives = 166/190 (87.37%), Query Frame = 0 

Query: 1   MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGDIPPSASASMPAVTTGQ 60
           M SDQPI SLY+A+FQTQFS SP P+ QLDGIAAVVG KVLFGDIPPS S S     TGQ
Sbjct: 1   MISDQPIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKTPAVTGQ 60

Query: 61  RSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEM 120
           +SYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RGSKARTNFEM
Sbjct: 61  KSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEM 120

Query: 121 PLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGMELDLKL 180
           PLVVP+ESTSSSSTSS + KRN +N N  K V K  GR+C+VVT+AAHLFS GMELDLKL
Sbjct: 121 PLVVPLESTSSSSTSSVEGKRNGNNSNKLKAVKKPNGRKCAVVTTAAHLFSRGMELDLKL 180

Query: 181 GVDFVNGGQS 191
           GVDFVNGGQS
Sbjct: 181 GVDFVNGGQS 190

[Close]
BLAST of Lag0002876 vs. NCBI nr
Match: XP_023004864.1 (ethylene-responsive transcription factor ERF084 [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-79
Identity = 155/190 (81.58%), Postives = 167/190 (87.89%), Query Frame = 0 

Query: 1   MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGDIPPSASASMPAVTTGQ 60
           M SDQPI SLY+A+FQTQFS SP P+ QLDGIAAVVG KVLFGDIPPS S S     TGQ
Sbjct: 1   MISDQPIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKAPAVTGQ 60

Query: 61  RSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEM 120
           +SYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RGSKARTNFEM
Sbjct: 61  KSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEM 120

Query: 121 PLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGMELDLKL 180
           PLVVP+ESTSSSSTSS + KRN +N N  K V K +GR+C+VVT+AAHLFS GMELDLKL
Sbjct: 121 PLVVPLESTSSSSTSSVEGKRNGNNGNKLKAVKKPSGRKCAVVTTAAHLFSRGMELDLKL 180

Query: 181 GVDFVNGGQS 191
           GVDFVNGGQS
Sbjct: 181 GVDFVNGGQS 190

[Close]
BLAST of Lag0002876 vs. NCBI nr
Match: XP_023514530.1 (ethylene-responsive transcription factor ERF084 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 155/190 (81.58%), Postives = 167/190 (87.89%), Query Frame = 0 

Query: 1   MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGDIPPSASASMPAVTTGQ 60
           M SDQPI SLY+A+FQTQFS SP P+ QLDGIAAVVG KVLFGDIPPS S S     TGQ
Sbjct: 1   MISDQPIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSRSKTPAVTGQ 60

Query: 61  RSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEM 120
           +SYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RGSKARTNFEM
Sbjct: 61  KSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEM 120

Query: 121 PLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGMELDLKL 180
           PLVVP+ESTSSSSTSS + KRN +N N  K V K +GR+C+VVT+AAHLFS GMELDLKL
Sbjct: 121 PLVVPLESTSSSSTSSVEGKRNGNNGNKLKAVKKPSGRKCAVVTTAAHLFSRGMELDLKL 180

Query: 181 GVDFVNGGQS 191
           GVDFVNGGQS
Sbjct: 181 GVDFVNGGQS 190

[Close]
BLAST of Lag0002876 vs. NCBI nr
Match: XP_022960429.1 (ethylene-responsive transcription factor ERF084-like [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 1.7e-78
Identity = 154/190 (81.05%), Postives = 165/190 (86.84%), Query Frame = 0 

Query: 1   MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGDIPPSASASMPAVTTGQ 60
           M SDQPI SLY+A+FQTQFS SP P+ QLDGIAAVVG KVLFGDIPPS S S     TGQ
Sbjct: 1   MISDQPIDSLYRAFFQTQFSQSPPPDSQLDGIAAVVGRKVLFGDIPPSTSGSKTPAVTGQ 60

Query: 61  RSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEM 120
           +SYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RGSKARTNFEM
Sbjct: 61  KSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEM 120

Query: 121 PLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGMELDLKL 180
           PLVVP+ESTSSSSTSS + KRN +N N  K V K  GR+C+VVT+AAHLFS GMELDLKL
Sbjct: 121 PLVVPLESTSSSSTSSVEGKRNGNNGNKLKAVKKPNGRKCAVVTTAAHLFSRGMELDLKL 180

Query: 181 GVDFVNGGQS 191
           G DFVNGGQS
Sbjct: 181 GFDFVNGGQS 190

[Close]
BLAST of Lag0002876 vs. NCBI nr
Match: KAA0058723.1 (AP2 domain-containing protein [Cucumis melo var. makuwa] >TYK10531.1 AP2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-64
Identity = 137/188 (72.87%), Postives = 149/188 (79.26%), Query Frame = 0 

Query: 1   MFSDQPIHSLYKAYFQTQFSHSPSPEFQLDGIAAVVGWKVLFGD------IPPSASASMP 60
           M +  PI  LY  +F+TQF HSP PE QLDGIAAVVG +VLFG+         S+S S  
Sbjct: 1   MINTHPIPPLYNTFFETQFPHSPPPESQLDGIAAVVGREVLFGEYNRPTPTKSSSSTSAM 60

Query: 61  AVTTGQRSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKA 120
           A TTGQRSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RGSKA
Sbjct: 61  APTTGQRSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKA 120

Query: 121 RTNFEMPLVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSPGM 180
           RTNFEMPLVVPVESTS+ STSS + KRN +         KK  R+CSVVTSAAHLFSPG+
Sbjct: 121 RTNFEMPLVVPVESTSAWSTSSVEVKRNGNK-------LKKNERKCSVVTSAAHLFSPGV 180

Query: 181 ELDLKLGV 183
           ELDLKLGV
Sbjct: 181 ELDLKLGV 181

[Close]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match: Q9M8M5 (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana OX=3702 GN=ERF084 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-33
Identity = 94/204 (46.08%), Postives = 110/204 (53.92%), Query Frame = 0 

Query: 19  FSHSPSPE------FQLDGIAAVVGWKVLFGDIPP-----------SASASMPAVTTGQR 78
           FS +P PE         D IAAVVG  VLFGD                   MP  T G  
Sbjct: 58  FSFNPKPEPENTHRVMDDSIAAVVGENVLFGDKNKVSDHLTKEGGVKRGRKMPQKTGG-- 117

Query: 79  SYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEMP 138
            + GVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR+RG+KA+TNF +P
Sbjct: 118 -FMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNFVIP 177

Query: 139 LVVPVESTSSSSTSSGKAKRNRSNCNPSKKVAKKTGRQCSVVTSAAHLFSP--------- 183
            + P E   +   +  + K+ +      KK  K + R+C  VTS A LF           
Sbjct: 178 PLFPKEIAQAQEDNRMRQKQKK------KKKKKVSVRKCVKVTSVAQLFDDANFINSSSI 237

[Close]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match: Q9SSA8 (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana OX=3702 GN=RAP2-12 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 62/138 (44.93%), Postives = 78/138 (56.52%), Query Frame = 0 

Query: 19  FSHSPSPEFQLDGIAAVVGWKV--LFGDIPPSASASMPAVTTGQRSYRGVRKRPWGRWSA 78
           F+ +P P        +V G KV  L GD   SA+         +  YRG+R+RPWG+W+A
Sbjct: 85  FTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKR------KNQYRGIRQRPWGKWAA 144

Query: 79  EIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEMPLVVPVESTSSSSTSS 138
           EIRD     R WLGTF TAEEAARAYDAAARR+RGSKA+ NF      P E+  ++S   
Sbjct: 145 EIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF------PEENMKANS--- 204

Query: 139 GKAKRNRSNCNPSKKVAK 155
              ++     N  K VAK
Sbjct: 205 ---QKRSVKANLQKPVAK 204

[Close]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match: Q9FYK5 (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana OX=3702 GN=ESR2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-18
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 63  YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEMPL 122
           YRGVR+RPWGR++AEIRD + + R WLGTFDTAEEAA AYD AAR MRG KARTNF  P+
Sbjct: 58  YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPM 117

[Close]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-18
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 50  SASMPAVTTGQRS---------YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAAR 109
           +A+ PA  TG+ +         +RGVRKRPWGR++AEIRD   + R WLGTFD+AE+AAR
Sbjct: 6   AAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAAR 65

Query: 110 AYDAAARRMRGSKARTNFEMP 122
           AYDAAAR +RG KA+TNF +P
Sbjct: 66  AYDAAARALRGPKAKTNFPLP 86

[Close]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match: Q9LW49 (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-18
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 63  YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRMRGSKARTNFEMPL 122
           YRGVRKRPWGR++AEIRD   + R WLGTFDTAEEAA+AYD AAR  RG KA+TNF  PL
Sbjct: 27  YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF--PL 86

Query: 123 VVPVESTSSSST---SSGK 139
               +STS SST   SSG+
Sbjct: 87  PSENQSTSHSSTMESSSGE 103

The following BLAST results are available for this feature:
BLAST of Lag0002876 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593374.12.6e-7981.58Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
XP_023004864.13.3e-7981.58ethylene-responsive transcription factor ERF084 [Cucurbita maxima][more]
XP_023514530.14.4e-7981.58ethylene-responsive transcription factor ERF084 [Cucurbita pepo subsp. pepo][more]
XP_022960429.11.7e-7881.05ethylene-responsive transcription factor ERF084-like [Cucurbita moschata][more]
KAA0058723.15.2e-6472.87AP2 domain-containing protein [Cucumis melo var. makuwa] >TYK10531.1 AP2 domain-... [more]
BLAST of Lag0002876 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M8M52.2e-3346.08Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9SSA82.0e-1844.93Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana OX=3702... [more]
Q9FYK53.4e-1873.33Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9SXS84.5e-1858.02Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ... [more]
Q9LW494.5e-1867.09Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ER... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 85..101
score: 71.23
coord: 63..74
score: 70.15
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 62..125
e-value: 2.2E-33
score: 126.9
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 62..111
e-value: 9.2E-16
score: 57.8
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 62..119
score: 22.694906
IPR001471AP2/ERF domainCDDcd00018AP2coord: 63..119
e-value: 8.93049E-16
score: 66.5263
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 62..120
e-value: 8.1E-27
score: 95.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..158
NoneNo IPR availablePANTHERPTHR31677:SF75ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084coord: 27..175
NoneNo IPR availablePANTHERPTHR31677AP2 DOMAIN CLASS TRANSCRIPTION FACTORcoord: 27..175
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 63..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002876.1Lag0002876.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity