Lag0002754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr4: 45335928 .. 45336775 (+)
RNA-Seq Expression	Lag0002754
Synteny	Lag0002754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCCTTATTCCTTTCTCTAACCCCCTTAACGTGTCGGACGGCTCGTTGAATGGGGGCCCCATCGGTAATTGGCCCTCGGGGTGGGCAGCTTTAGCTTCTGTAGGCATTCAAGCAATTCCCCCGAAGGAATGTCAAGTAACTCCTATCTCTACGGACAAGGTTCCGATCGTCAGTAAGGATGAGGGGGGTAAAAAGAAGTTGATTGACAAGGTGGATAGGGTGGAGAAGGAGCTTAGGAAGCTGAGTAGCTCGGTTAATTATGACAAAAAGAGGGCTTCTAAGAAAGTCGGGGAGGTGTCGGTTTCCCAATGATAGTGCTGTCTTGGAATGTGAGGGGTGTGGGGGGTAAAGTTAAGCGTCGTCTGGTGAAAGAGTCTATTGCTCAAGAAAATCCGGATATTGTCATTTTAGTGGAGACTAAAAGAGGTAGCTTTAATCGTCATCTGGTGAATAGCTTATGGGGCAGCAGGTATGTGGATTGGGAGATTCTTGAGGCGGAGGGGGCCTCAGGAGGCATCGCCATTCTCTGGGATAGTAGGGTGGTTACCCCGATCGAAGTCATTAAGGGTTCGTTTTCCGTTTCGATTTCTTTTCGGCTGAAGGATGAGTCAGTTAGTTGGGTGACAGGAGTTTATGGCCCCCCGAGAAGTAGAGGAAGGTCGGATTTTTGGAAGGAGCTGGAGGATCTTTATGGCCTTTGTGGTGATTGTTGGTGTGTGGCTGGGGATTTTAATGTGATCCGATCGCCCGTCGAGAGATCTTCCGGGGGTAGATTCTCTAGATCTATGACCCAGTTCAATAAGTTCATTGAGGGGTCGTGCCTTACGGATCCTCGTTGGTGA

mRNA sequence

ATGGGCAGCCTTATTCCTTTCTCTAACCCCCTTAACGTGTCGGACGGCTCGTTGAATGGGGGCCCCATCGGTAATTGGCCCTCGGGGTGGGCAGCTTTAGCTTCTGTAGGCATTCAAGCAATTCCCCCGAAGGAATGTCAAGTAACTCCTATCTCTACGGACAAGGTTCCGATCGTCAGTAAGGATGAGGGGGTTAAGCGTCGTCTGGTGAAAGAGTCTATTGCTCAAGAAAATCCGGATATTGTCATTTTAGTGGAGACTAAAAGAGGTAGCTTTAATCGTCATCTGGTGAATAGCTTATGGGGCAGCAGGTATGTGGATTGGGAGATTCTTGAGGCGGAGGGGGCCTCAGGAGGCATCGCCATTCTCTGGGATAGTAGGGTGGTTACCCCGATCGAAGTCATTAAGGGTTCGTTTTCCGTTTCGATTTCTTTTCGGCTGAAGGATGAGTCAGTTAGTTGGGTGACAGGAGTTTATGGCCCCCCGAGAAGTAGAGGAAGGTCGGATTTTTGGAAGGAGCTGGAGGATCTTTATGGCCTTTGTGGTGATTGTTGGTGTGTGGCTGGGGATTTTAATGTGATCCGATCGCCCGTCGAGAGATCTTCCGGGGGTAGATTCTCTAGATCTATGACCCAGTTCAATAAGTTCATTGAGGGGTCGTGCCTTACGGATCCTCGTTGGTGA

Coding sequence (CDS)

ATGGGCAGCCTTATTCCTTTCTCTAACCCCCTTAACGTGTCGGACGGCTCGTTGAATGGGGGCCCCATCGGTAATTGGCCCTCGGGGTGGGCAGCTTTAGCTTCTGTAGGCATTCAAGCAATTCCCCCGAAGGAATGTCAAGTAACTCCTATCTCTACGGACAAGGTTCCGATCGTCAGTAAGGATGAGGGGGTTAAGCGTCGTCTGGTGAAAGAGTCTATTGCTCAAGAAAATCCGGATATTGTCATTTTAGTGGAGACTAAAAGAGGTAGCTTTAATCGTCATCTGGTGAATAGCTTATGGGGCAGCAGGTATGTGGATTGGGAGATTCTTGAGGCGGAGGGGGCCTCAGGAGGCATCGCCATTCTCTGGGATAGTAGGGTGGTTACCCCGATCGAAGTCATTAAGGGTTCGTTTTCCGTTTCGATTTCTTTTCGGCTGAAGGATGAGTCAGTTAGTTGGGTGACAGGAGTTTATGGCCCCCCGAGAAGTAGAGGAAGGTCGGATTTTTGGAAGGAGCTGGAGGATCTTTATGGCCTTTGTGGTGATTGTTGGTGTGTGGCTGGGGATTTTAATGTGATCCGATCGCCCGTCGAGAGATCTTCCGGGGGTAGATTCTCTAGATCTATGACCCAGTTCAATAAGTTCATTGAGGGGTCGTGCCTTACGGATCCTCGTTGGTGA

Protein sequence

MGSLIPFSNPLNVSDGSLNGGPIGNWPSGWAALASVGIQAIPPKECQVTPISTDKVPIVSKDEGVKRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDPRW

Homology

[Close]

BLAST of Lag0002754 vs. NCBI nr
Match: VVA20479.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-39
Identity = 80/160 (50.00%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+
Sbjct: 23  KRLLVKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIAVLWN 82

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ V+ I+ + G FSVSI       +  W++G+YGP R R R  FW+EL DLYG CGD W
Sbjct: 83  SQSVSVIDSMVGDFSVSIRIVENIGTDWWLSGIYGPCRQRERISFWEELADLYGYCGDKW 142

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           C+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 143 CLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 182

[Close]

BLAST of Lag0002754 vs. NCBI nr
Match: BBH07150.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 168.7 bits (426), Expect = 5.8e-38
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 70  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVV 129
           VKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V
Sbjct: 8   VKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSV 67

Query: 130 TPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCWCVAG 189
           + I+ + G FSVSI       +  W++G+YGP R R R  FW+EL DLYG CGD WC+ G
Sbjct: 68  SVIDSMVGEFSVSIRIVENIGTDWWLSGIYGPCRQRERISFWEELADLYGYCGDKWCLGG 127

Query: 190 DFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           DFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 128 DFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 163

[Close]

BLAST of Lag0002754 vs. NCBI nr
Match: CAN74319.1 (hypothetical protein VITISV_035345 [Vitis vinifera])

HSP 1 Score: 168.7 bits (426), Expect = 5.8e-38
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KRR+VK+ +  E PDIV++ ETK+   +R  V SLW +R  +W +L A GASGGI ++WD
Sbjct: 795 KRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSLWTARNKEWAVLPACGASGGILVMWD 854

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ +   EV+ GSFSVS+ F +      W++ VYGP  +  R DFW+EL D++GL   CW
Sbjct: 855 SKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFGLSSPCW 914

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           CV GDFNVIR   E+  GGR + SM   + FI  + L DP
Sbjct: 915 CVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDP 954

[Close]

BLAST of Lag0002754 vs. NCBI nr
Match: RVW78901.1 (hypothetical protein CK203_043153 [Vitis vinifera])

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-37
Identity = 76/160 (47.50%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KRR+VK+ +  E PDIV++ ETK+   +R  V S+W +R  +W +L A GASGGI ++WD
Sbjct: 829 KRRVVKDFLISEKPDIVMIQETKKAECDRRFVGSVWTARNKEWAVLPACGASGGILVIWD 888

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ +   EV+ GSFSVSI F +      W++ VYGP  +  R DFW EL D++GL   CW
Sbjct: 889 SKKLHSEEVVLGSFSVSIKFAVDGSEQFWISAVYGPNSTALRKDFWVELSDIFGLSSPCW 948

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           CV GDFNVIR   E+  GGR + SM   + FI  + L DP
Sbjct: 949 CVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDP 988

[Close]

BLAST of Lag0002754 vs. NCBI nr
Match: CAN68165.1 (hypothetical protein VITISV_008538 [Vitis vinifera])

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-37
Identity = 75/160 (46.88%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KRR+VK+ +  E PDIV++ ETK+   +R  V S+W +R  +W +L A GASGGI ++WD
Sbjct: 127 KRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSVWTARNKEWAVLPACGASGGILVIWD 186

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ +   EV+ GSFSVS+ F +      W++ VYGP  +  R DFW EL D++GL   CW
Sbjct: 187 SKKLHSEEVVLGSFSVSVKFAVDGSEQFWJSAVYGPNSTALRKDFWVELSDIFGLSSPCW 246

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           CV GDFNVIR   E+  GGR + SM   + FI  + L DP
Sbjct: 247 CVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDP 286

[Close]

BLAST of Lag0002754 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 80/160 (50.00%), Postives = 109/160 (68.12%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+
Sbjct: 338 KRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVFSPSLGRSGGIAVLWN 397

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ V+ I+ + G FSVSI       +  W++G+YGP R R R+ FW+EL DLYG CGD W
Sbjct: 398 SQSVSVIDSMVGEFSVSIRIEENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYCGDMW 457

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           C+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 458 CLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 497

[Close]

BLAST of Lag0002754 vs. ExPASy TrEMBL
Match: M5VS59 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.0e-40
Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KR LVKE + +  PDIVIL+ETK+ + +R LV  +WGSR+ +W    + G SGGIA+LW+
Sbjct: 2   KRLLVKEQLRRLKPDIVILLETKKETVDRQLVAGVWGSRFKEWVFSPSLGRSGGIAVLWN 61

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ V+ I+ + G FSVSI       +  W++G+YGP R R R+ FW+EL DLYG CGD W
Sbjct: 62  SQSVSVIDSMVGEFSVSIRIVENIGTDWWLSGIYGPCRQRERNSFWEELADLYGFCGDKW 121

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           C+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 122 CLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 161

[Close]

BLAST of Lag0002754 vs. ExPASy TrEMBL
Match: A0A5E4F090 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035017 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 80/160 (50.00%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+
Sbjct: 23  KRLLVKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIAVLWN 82

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ V+ I+ + G FSVSI       +  W++G+YGP R R R  FW+EL DLYG CGD W
Sbjct: 83  SQSVSVIDSMVGDFSVSIRIVENIGTDWWLSGIYGPCRQRERISFWEELADLYGYCGDKW 142

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           C+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 143 CLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 182

[Close]

BLAST of Lag0002754 vs. ExPASy TrEMBL
Match: A5B9F0 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_035345 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 66  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWD 125
           KRR+VK+ +  E PDIV++ ETK+   +R  V SLW +R  +W +L A GASGGI ++WD
Sbjct: 795 KRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSLWTARNKEWAVLPACGASGGILVMWD 854

Query: 126 SRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCW 185
           S+ +   EV+ GSFSVS+ F +      W++ VYGP  +  R DFW+EL D++GL   CW
Sbjct: 855 SKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFGLSSPCW 914

Query: 186 CVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           CV GDFNVIR   E+  GGR + SM   + FI  + L DP
Sbjct: 915 CVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDP 954

[Close]

BLAST of Lag0002754 vs. ExPASy TrEMBL
Match: A0A4Y1RS61 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 70  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVV 129
           VKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V
Sbjct: 8   VKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSV 67

Query: 130 TPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCWCVAG 189
           + I+ + G FSVSI       +  W++G+YGP R R R  FW+EL DLYG CGD WC+ G
Sbjct: 68  SVIDSMVGEFSVSIRIVENIGTDWWLSGIYGPCRQRERISFWEELADLYGYCGDKWCLGG 127

Query: 190 DFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP 226
           DFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Sbjct: 128 DFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDP 163

The following BLAST results are available for this feature:

BLAST of Lag0002754 vs. NCBI nr


Match Name	E-value	Identity	Description
VVA20479.1	2.4e-39	50.00	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
BBH07150.1	5.8e-38	49.36	TatD related DNase [Prunus dulcis]	[more]
CAN74319.1	5.8e-38	47.50	hypothetical protein VITISV_035345 [Vitis vinifera]	[more]
RVW78901.1	1.3e-37	47.50	hypothetical protein CK203_043153 [Vitis vinifera]	[more]
CAN68165.1	2.2e-37	46.88	hypothetical protein VITISV_008538 [Vitis vinifera]	[more]

BLAST of Lag0002754 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WJ76	2.3e-40	50.00	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5VS59	3.0e-40	50.00	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A5E4F090	1.1e-39	50.00	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]
A5B9F0	2.8e-38	47.50	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A4Y1RS61	2.8e-38	49.36	TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1	[more]

BLAST of Lag0002754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 58..226 e-value: 2.2E-19 score: 72.1
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 65..225
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 64..205
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 64..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002754.1	Lag0002754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0050789	regulation of biological process
molecular_function	GO:0004518	nuclease activity