Lag0002701 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002701
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionS-adenosylmethionine synthase
Locationchr4: 44948474 .. 44949076 (+)
RNA-Seq ExpressionLag0002701
SyntenyLag0002701
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCGTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGCTAGTCCCTGTACCCTTGAGCTTCGCCTTCATTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGGTTTGCGAGCTCTGTTCACCACTCGTTCATTGCCATTTTTCTTTTTCTGCATCTTTGAGCATGATTGTGGTTCTTCATTTCTTCTTCTTTGCTCCTGGTTTCTGAATGAATTTGGGGCTTTTTCAGCTTTGTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCTCCTTGTGAGATGTGAATTCTTGCAGATCTGA

mRNA sequence

ATGGCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCGTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGCTAGTCCCTGTACCCTTGAGCTTCGCCTTCATTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGCTTTGTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCTCCTTGTGAGATGTGAATTCTTGCAGATCTGA

Coding sequence (CDS)

ATGGCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCGTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGCTAGTCCCTGTACCCTTGAGCTTCGCCTTCATTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGCTTTGTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCTCCTTGTGAGATGTGAATTCTTGCAGATCTGA

Protein sequence

MAVTRHVIERLISNIDRSITHRCPFTNSISTATIFHVQRLGRIFRNSIPSPYTLPIGSRLFRPVIPVAGRVAARYKYRLCSFASPCTLELRLHLGVWFGWRISSNSFSLPDLRSRFQQLCNLAVVMDLFVLMCESVVYCLYVAMEYVALLVRCEFLQI
Homology
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BLAST of Lag0002701 vs. NCBI nr
Match: KAA0058565.1 (S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa] >TYK10363.1 S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 5.5e-19
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 0 

Query: 50  SPYTLPIG-SRLFRPVIPVAGRVAARYKYRLCSFASPCTLELRLHLGVWFGWRISSNSFS 109
           SPYT P    R  RPVIPVAG+VA RYKY LCS  SPCT+ELRL + +WFGWRISSNSFS
Sbjct: 3   SPYTPPYWLPRASRPVIPVAGKVAGRYKYPLCSSRSPCTVELRLLIELWFGWRISSNSFS 62

Query: 110 LPDLRSRFQQ-----LCNLAVVMDLFVLMCESV 137
           LPDLR RF Q     L +    M+ F+   ESV
Sbjct: 63  LPDLRCRFHQGNFLFLYSSGTEMETFLFTSESV 95

The following BLAST results are available for this feature:
BLAST of Lag0002701 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058565.15.5e-1961.29S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa] >TYK10363.1 S-ad... [more]
BLAST of Lag0002701 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002701.1Lag0002701.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
molecular_function GO:0043167 ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016740 transferase activity