Lag0002655 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCACTGGCTCTTCTTCATCCTCCAGCCATCTCTTCTGCTCCTCTCCACTTCTCCTCCAAATCCCACCTTCGAAATCGTCACTTTAACTTCTCCTGTTCCGCTCTTCAATCTCAATCGGTAAGATTTCAATCTTCCCCTCGCCGTCTTGCAATTCAACTTCAGCTCAATTCTGTTTCTCCATTTTCTTCATCGTGTTTGCATCCATACATAAAGGGTGAAACATCTTCGAAGCCCGAGTACAAACCTGGAATTCTCGATGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGTTGTTTAATTCGAGAGTTTTCTTTCATGGTATCACCAATTGGGTTTCTGAGAAAACAAATTGATGGAATTCATTTGTAGTTACTTTAATGACTGATTTGACTGCAGGAAGTGGGCTGGGATTCAGAAAAACCTGGATATGATGGACTAATTGAAGTCGCTAACAGGCTCACGATGAAGGGCAAAACCAATTCTGATACCATAGAAGCGTCGGTATTTCTATTTTAAGATAGATTTGTAGAGACAGAACAGAACATCTTATTCTTTTGTACTCTTTGAACATCCGAGTGTAATGGAAATTGTAATAGACTAAGTTATGTTCGTAGATTACATTATGAAAATCTTGTGGTTATTCTGCAGGTTCGAATTTTAACAGCTTTATTTCCTCCTCTTCTGTTGGAACTCTATCGAATGCTGGTATCACCTATTGCTGGCGGCAAAGTGGCTGCCATTATGGTCGGTGAGTTGTGCCTTCAATCTTTATCTGTATCTTTAATTAGGATCTTATTCCTTTTTTATTGGGGAATCAATTGCTTTTTATTTGTTTGACTTTGATCTGTCTCGTGTGAGATTTTGAAGATTAGTTGAACTGTTCTGCCCCTTTTTTTCTGTGTTCAAAGCAAGGGTGACTGCGCTGACTTGTCAATGGCTTATGGGAACTTGTACAGTAAATTCAATTGACTTACCTGATGGATCGTCTTGTCAAAGTGGGGTATGAATTATTGATTACCATGTTTCGATGAAGTGGGTGTTGCTTATATTTTGGATTTTTTAAATGTCAATCGAATAGTCAAAGCTTGTTTTTCATTTTTGTGGTCATTGATGCAGGTCTTCGTTGAAAAATGCAAGTACTTGGAAGAAAGCAAATGCATAGGAATTTGTATCAACACTTGCAAGTTTCCAACTCAGGTTTGTTCTTTCCAACCTATATATCAAGCTCTTTCTTTACATCACTGGTTATCTGGGAGCATCTTGTTCTTTCCAGTATCTTGTGATAGGAGTGCTATTAGAATAAAATTAGGAGTGTTATTGGGAGATTAAGGGTATGGTAGCAAATAGCTACGGAGTTTGTTATGAATAGAGTGGGTTAGAAAGGACGAAGGCAAGGATTGATTTGGTTGACTTAGGCTTGAGTGAGAGTGCTCAATAGAGGAGAGTCTAAATACCTCGAATTACTTGAGTTATCTTTTAGTTTCGTTATATTTTATATGGCAGGTTCTATCATCTTGACTTCGTATACACTATTCATTTGACTTGACTCGAACTGATCTTGACAGTCTTGATTCTGATGTAGAGTTTCTTCAAGGAGCAGATGGGAGTTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAAGTAATTCTATCACTTAGCTCAACATTTCTGTTATACTATTGGATAACATTGTGGCTAGAATATATAACTCCTGTTACATGATGTTGTATCGATCTCCAGGAATCTTTTGACTCGGATTATTGTGATTTGATTGAAATGAAATTACTGAATGTAGTGTGGATTCTCTTTTTAAGTTTAACAAACAATGCTACTGACATCTAGACTCTAGTTCTATGAAGATTTCATTAGAGATTCCCTATGAAATCGATTCGAATAAATCCATAATTAGTTTGGAAATGCTTTTGGGACTAGTGCATGGAACTTGCCATCGCTGTTGCTGTCTGTAATTTTGATCAAATGGTGGTTGAACTTAACTGA ATGAAGCCACTGGCTCTTCTTCATCCTCCAGCCATCTCTTCTGCTCCTCTCCACTTCTCCTCCAAATCCCACCTTCGAAATCGTCACTTTAACTTCTCCTGTTCCGCTCTTCAATCTCAATCGGTAAGATTTCAATCTTCCCCTCGCCGTCTTGCAATTCAACTTCAGCTCAATTCTGTTTCTCCATTTTCTTCATCGTGTTTGCATCCATACATAAAGGGTGAAACATCTTCGAAGCCCGAGTACAAACCTGGAATTCTCGATGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTGGGCTGGGATTCAGAAAAACCTGGATATGATGGACTAATTGAAGTCGCTAACAGGCTCACGATGAAGGGCAAAACCAATTCTGATACCATAGAAGCGTCGGTTCGAATTTTAACAGCTTTATTTCCTCCTCTTCTGTTGGAACTCTATCGAATGCTGGTATCACCTATTGCTGGCGGCAAAGTGGCTGCCATTATGGTCGCAAGGGTGACTGCGCTGACTTGTCAATGGCTTATGGGAACTTGTACAGTAAATTCAATTGACTTACCTGATGGATCGTCTTGTCAAAGTGGGGTCTTCGTTGAAAAATGCAAGTACTTGGAAGAAAGCAAATGCATAGGAATTTGTATCAACACTTGCAAGTTTCCAACTCAGAGTTTCTTCAAGGAGCAGATGGGAGTTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAATGCATGGAACTTGCCATCGCTGTTGCTGTCTGTAATTTTGATCAAATGGTGGTTGAACTTAACTGA ATGAAGCCACTGGCTCTTCTTCATCCTCCAGCCATCTCTTCTGCTCCTCTCCACTTCTCCTCCAAATCCCACCTTCGAAATCGTCACTTTAACTTCTCCTGTTCCGCTCTTCAATCTCAATCGGTAAGATTTCAATCTTCCCCTCGCCGTCTTGCAATTCAACTTCAGCTCAATTCTGTTTCTCCATTTTCTTCATCGTGTTTGCATCCATACATAAAGGGTGAAACATCTTCGAAGCCCGAGTACAAACCTGGAATTCTCGATGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTGGGCTGGGATTCAGAAAAACCTGGATATGATGGACTAATTGAAGTCGCTAACAGGCTCACGATGAAGGGCAAAACCAATTCTGATACCATAGAAGCGTCGGTTCGAATTTTAACAGCTTTATTTCCTCCTCTTCTGTTGGAACTCTATCGAATGCTGGTATCACCTATTGCTGGCGGCAAAGTGGCTGCCATTATGGTCGCAAGGGTGACTGCGCTGACTTGTCAATGGCTTATGGGAACTTGTACAGTAAATTCAATTGACTTACCTGATGGATCGTCTTGTCAAAGTGGGGTCTTCGTTGAAAAATGCAAGTACTTGGAAGAAAGCAAATGCATAGGAATTTGTATCAACACTTGCAAGTTTCCAACTCAGAGTTTCTTCAAGGAGCAGATGGGAGTTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAATGCATGGAACTTGCCATCGCTGTTGCTGTCTGTAATTTTGATCAAATGGTGGTTGAACTTAACTGA MKPLALLHPPAISSAPLHFSSKSHLRNRHFNFSCSALQSQSVRFQSSPRRLAIQLQLNSVSPFSSSCLHPYIKGETSSKPEYKPGILDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKTNSDTIEASVRILTALFPPLLLELYRMLVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIDLPDGSSCQSGVFVEKCKYLEESKCIGICINTCKFPTQSFFKEQMGVPLLMEPNFNDYSCQCMELAIAVAVCNFDQMVVELN Homology
BLAST of Lag0002655 vs. NCBI nr
Match: XP_038898256.1 (beta-carotene isomerase D27, chloroplastic [Benincasa hispida]) HSP 1 Score: 388.7 bits (997), Expect = 4.3e-104 Identity = 198/251 (78.88%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Lag0002655 vs. NCBI nr
Match: XP_023004624.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]) HSP 1 Score: 385.6 bits (989), Expect = 3.6e-103 Identity = 200/252 (79.37%), Postives = 209/252 (82.94%), Query Frame = 0
BLAST of Lag0002655 vs. NCBI nr
Match: KAG6593243.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 383.6 bits (984), Expect = 1.4e-102 Identity = 199/252 (78.97%), Postives = 208/252 (82.54%), Query Frame = 0
BLAST of Lag0002655 vs. NCBI nr
Match: XP_023514967.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 382.9 bits (982), Expect = 2.3e-102 Identity = 199/252 (78.97%), Postives = 207/252 (82.14%), Query Frame = 0
BLAST of Lag0002655 vs. NCBI nr
Match: XP_022959652.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]) HSP 1 Score: 381.3 bits (978), Expect = 6.8e-102 Identity = 198/252 (78.57%), Postives = 206/252 (81.75%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 8.0e-21 Identity = 66/213 (30.99%), Postives = 111/213 (52.11%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.8e-20 Identity = 61/183 (33.33%), Postives = 94/183 (51.37%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.8e-17 Identity = 53/220 (24.09%), Postives = 104/220 (47.27%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy TrEMBL
Match: A0A6J1KWU1 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497865 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103 Identity = 200/252 (79.37%), Postives = 209/252 (82.94%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy TrEMBL
Match: A0A6J1H551 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460668 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 3.3e-102 Identity = 198/252 (78.57%), Postives = 206/252 (81.75%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy TrEMBL
Match: A0A1S3BRJ4 (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492751 PE=4 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 1.6e-101 Identity = 199/252 (78.97%), Postives = 208/252 (82.54%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy TrEMBL
Match: A0A5D3D2R7 (Beta-carotene isomerase D27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001770 PE=4 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 2.8e-101 Identity = 198/252 (78.57%), Postives = 208/252 (82.54%), Query Frame = 0
BLAST of Lag0002655 vs. ExPASy TrEMBL
Match: A0A6J1DMD9 (beta-carotene isomerase D27, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022359 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 4.7e-101 Identity = 194/251 (77.29%), Postives = 205/251 (81.67%), Query Frame = 0
BLAST of Lag0002655 vs. TAIR 10
Match: AT4G01995.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 264.6 bits (675), Expect = 8.6e-71 Identity = 123/176 (69.89%), Postives = 149/176 (84.66%), Query Frame = 0
BLAST of Lag0002655 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25 Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 0
BLAST of Lag0002655 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 5.7e-22 Identity = 66/213 (30.99%), Postives = 111/213 (52.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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