Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAGAAAAACGCCAATAATGTGGGCCGTAGAGCATGGAACCTTCTTCGCCTAGCAATCATATGGGCAAGAAAAGGTGCCCTTCTCAAGCCACGCTTCCTCATGGACCTCCGCCTCCTGCCCAAGTTCATCAAGAGCCTCGCCCACTCCACCCCCCGTGCCCACCTACATTACGGCGATCACGAGCTCTCCTTCGACGAAACGCCCATTTTCCATGTCAAGATGAATCGCCCCGCCTCGATGCGCTTCCACTTCCCCTGCATTACCCCGCACGTCGATTTCGAATATGAGTTTCATGGCAATGTCGATGTCGATGTCGATGGCGATGGTAGTGAAATTTGTAGCTACGATGGAGAGCGGAGGAGTTCGGGATATGATGGTGGGGAGGAACGAGATGATGATGACGACGATGAAGAAGAAGATGGGATTGATTTGAGAGCTGAGAAGTTCATAGCTGAATTCTATGAGCAAATGAAAATGCAAAGACAGATTTCGTTTTCGCAATATGATCATAAGAGTCTATGA mRNA sequence
ATGCCAAAGAAAAACGCCAATAATGTGGGCCGTAGAGCATGGAACCTTCTTCGCCTAGCAATCATATGGGCAAGAAAAGGTGCCCTTCTCAAGCCACGCTTCCTCATGGACCTCCGCCTCCTGCCCAAGTTCATCAAGAGCCTCGCCCACTCCACCCCCCGTGCCCACCTACATTACGGCGATCACGAGCTCTCCTTCGACGAAACGCCCATTTTCCATGTCAAGATGAATCGCCCCGCCTCGATGCGCTTCCACTTCCCCTGCATTACCCCGCACGTCGATTTCGAATATGAGTTTCATGGCAATGTCGATGTCGATGTCGATGGCGATGGTAGTGAAATTTGTAGCTACGATGGAGAGCGGAGGAGTTCGGGATATGATGGTGGGGAGGAACGAGATGATGATGACGACGATGAAGAAGAAGATGGGATTGATTTGAGAGCTGAGAAGTTCATAGCTGAATTCTATGAGCAAATGAAAATGCAAAGACAGATTTCGTTTTCGCAATATGATCATAAGAGTCTATGA Coding sequence (CDS)
ATGCCAAAGAAAAACGCCAATAATGTGGGCCGTAGAGCATGGAACCTTCTTCGCCTAGCAATCATATGGGCAAGAAAAGGTGCCCTTCTCAAGCCACGCTTCCTCATGGACCTCCGCCTCCTGCCCAAGTTCATCAAGAGCCTCGCCCACTCCACCCCCCGTGCCCACCTACATTACGGCGATCACGAGCTCTCCTTCGACGAAACGCCCATTTTCCATGTCAAGATGAATCGCCCCGCCTCGATGCGCTTCCACTTCCCCTGCATTACCCCGCACGTCGATTTCGAATATGAGTTTCATGGCAATGTCGATGTCGATGTCGATGGCGATGGTAGTGAAATTTGTAGCTACGATGGAGAGCGGAGGAGTTCGGGATATGATGGTGGGGAGGAACGAGATGATGATGACGACGATGAAGAAGAAGATGGGATTGATTTGAGAGCTGAGAAGTTCATAGCTGAATTCTATGAGCAAATGAAAATGCAAAGACAGATTTCGTTTTCGCAATATGATCATAAGAGTCTATGA Protein sequence
MPKKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMDLRLLPKFIKSLAHSTPRAHLHYGDHELSFDETPIFHVKMNRPASMRFHFPCITPHVDFEYEFHGNVDVDVDGDGSEICSYDGERRSSGYDGGEERDDDDDDEEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYDHKSL
Homology
BLAST of Lag0002625 vs. NCBI nr
Match:
XP_038899391.1 (uncharacterized protein LOC120086700 [Benincasa hispida])
HSP 1 Score: 272.7 bits (696), Expect = 2.2e-69
Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 0
Query: 3 KKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMDLRLLPKFIKSLAHSTPRAHLHYGDH 62 +K +NVGRRAWNLLRLA++WARKG + K +FLMDLRL+PKFIKSL HSTPR HLHYGDH Sbjct: 2 QKKHSNVGRRAWNLLRLAMMWARKGGVFKRKFLMDLRLVPKFIKSLGHSTPRGHLHYGDH 61 Query: 63 ELSFDETPIFHVKMNRPASMRFHFPCITPH-VDFEYEFHGNVDVDVDGDGSEICSYDGER 122 ELSFDETP+FHVKM+RPASMRFHFPCITP VDF+YEF G+ D D D D SE+CSYDGER Sbjct: 62 ELSFDETPVFHVKMHRPASMRFHFPCITPQAVDFKYEFDGDGDTD-DEDVSEVCSYDGER 121 Query: 123 RSSGYDGGEERDDDDDDEEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYD 172 RSSGYDGGEER+DD DD EED IDLRAEKFIAEFYEQMKMQRQISFSQYD Sbjct: 122 RSSGYDGGEEREDDKDD-EEDAIDLRAEKFIAEFYEQMKMQRQISFSQYD 169
BLAST of Lag0002625 vs. NCBI nr
Match:
XP_004136158.2 (uncharacterized protein LOC101220264 [Cucumis sativus] >KGN44997.1 hypothetical protein Csa_015995 [Cucumis sativus])
HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 139/178 (78.09%), Postives = 153/178 (85.96%), Query Frame = 0
Query: 3 KKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMDLRLLPKFIKSLAHSTPRAHLHYGDH 62 + N NNVGRRAWNLLRLA+IWARKG + K RFLMDLRL+PKFIKSL HSTPR LHYGDH Sbjct: 5 RHNTNNVGRRAWNLLRLAMIWARKGGVFKRRFLMDLRLVPKFIKSLGHSTPRGQLHYGDH 64 Query: 63 ELSFDETPIFHVKMNRPASMRFHFPCITPH-VDFEYEFHGNVDVDVDGDGSEICSYDGER 122 ELSFDETP+FHVKM+RPAS+RFHFPCITP VDF+YEF GN D D D D SE+CS D ER Sbjct: 65 ELSFDETPVFHVKMHRPASLRFHFPCITPQVVDFKYEFEGNAD-DDDDDVSEVCSSDDER 124 Query: 123 RS-SGYDGGEERDDDDDD----EEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYDHKS 175 RS SGYDGGEER+DDDDD E+++GIDLRAEKFIAEFYEQMKMQRQISFSQYD + Sbjct: 125 RSLSGYDGGEEREDDDDDNEDGEDQNGIDLRAEKFIAEFYEQMKMQRQISFSQYDRSN 181
BLAST of Lag0002625 vs. NCBI nr
Match:
XP_008451654.1 (PREDICTED: uncharacterized protein LOC103492886 [Cucumis melo])
HSP 1 Score: 263.8 bits (673), Expect = 1.0e-66
Identity = 139/178 (78.09%), Postives = 149/178 (83.71%), Query Frame = 0
Query: 1 MPKKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMDLRLLPKFIKSLAHSTPRA-HLHY 60 M K NVGRRAWNLLRLA+IWARKG + K RFLMDLRL+PKFIKSL HSTPR HLHY Sbjct: 1 MQNKRHTNVGRRAWNLLRLAMIWARKGGVFKRRFLMDLRLVPKFIKSLGHSTPRGRHLHY 60 Query: 61 GDHELSFDETPIFHVKMNRPASMRFHFPCITPH-VDFEYEFHGNVDVDVDGDG-SEICSY 120 GDHELSFDETP+FHVKM+RPAS+RFHFPCITP VDF+YEF N D D D D SE+CS Sbjct: 61 GDHELSFDETPVFHVKMHRPASLRFHFPCITPQAVDFKYEFDANADDDDDDDDVSEVCSS 120 Query: 121 DGERRSSGYDGGEERDDDDDDEEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYDHKSL 176 D ERRSSGYDGGEER+DDD EE+GIDLRAEKFIAEFYEQMKMQRQISFSQYD L Sbjct: 121 DDERRSSGYDGGEEREDDD---EENGIDLRAEKFIAEFYEQMKMQRQISFSQYDKNRL 175
BLAST of Lag0002625 vs. NCBI nr
Match:
XP_023549395.1 (uncharacterized protein LOC111807760 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 252.3 bits (643), Expect = 3.1e-63
Identity = 133/173 (76.88%), Postives = 148/173 (85.55%), Query Frame = 0
Query: 1 MPKKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMD-LRLLPKFIKSLAHSTPRAHLHY 60 MP+KN +NVGRRAWN LRLAIIWARKG + K RFLMD LRL+PKFIK+L HSTPR HLHY Sbjct: 1 MPRKN-SNVGRRAWNFLRLAIIWARKGGVFKRRFLMDHLRLVPKFIKTLGHSTPRGHLHY 60 Query: 61 GDHELSFDETPIFHVKMNRPASMRFHFPCITPH-VDFEYEFHGNVDVDVDGDGSEICSYD 120 GDHELSFDETP+FH+KM+RP SMRFH PCITP VDFEYEF D D D DGSE+ S Sbjct: 61 GDHELSFDETPVFHIKMHRPTSMRFHIPCITPETVDFEYEFED--DCDSDDDGSEVYSQG 120 Query: 121 GERRSSGYDGGEERDDDDDDEEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYD 172 ERRSSGYDGGEE+ +D+++ EE+GIDLRAEKFIAEFYEQMKMQRQISFSQYD Sbjct: 121 SERRSSGYDGGEEQ-EDEEEVEENGIDLRAEKFIAEFYEQMKMQRQISFSQYD 169
BLAST of Lag0002625 vs. NCBI nr
Match:
XP_022953913.1 (uncharacterized protein LOC111456316 [Cucurbita moschata])
HSP 1 Score: 251.5 bits (641), Expect = 5.2e-63
Identity = 132/173 (76.30%), Postives = 149/173 (86.13%), Query Frame = 0
Query: 1 MPKKNANNVGRRAWNLLRLAIIWARKGALLKPRFLMD-LRLLPKFIKSLAHSTPRAHLHY 60 MP+KN +NVGRRAWN LRLAIIWARKG + K RFLMD LRL+PKFIK+L HSTPR HLHY Sbjct: 1 MPRKN-SNVGRRAWNFLRLAIIWARKGGVFKRRFLMDHLRLVPKFIKTLGHSTPRGHLHY 60 Query: 61 GDHELSFDETPIFHVKMNRPASMRFHFPCITPH-VDFEYEFHGNVDVDVDGDGSEICSYD 120 GDHELSFDETP+FH+KM+RP SMRFH PCITP VDFEYEF D D D DGSE+ S D Sbjct: 61 GDHELSFDETPVFHIKMHRPTSMRFHLPCITPETVDFEYEFED--DCDSDDDGSEVHSQD 120 Query: 121 GERRSSGYDGGEERDDDDDDEEEDGIDLRAEKFIAEFYEQMKMQRQISFSQYD 172 ERRSSGY+GGEE+ +D+++ EE+GIDLRAEKFIA+FYEQMKMQRQISFSQYD Sbjct: 121 SERRSSGYEGGEEQ-EDEEEVEENGIDLRAEKFIAKFYEQMKMQRQISFSQYD 169
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_038899391.1 2.2e-69 81.76 uncharacterized protein LOC120086700 [Benincasa hispida] [more]
XP_004136158.2 1.2e-67 78.09 uncharacterized protein LOC101220264 [Cucumis sativus] >KGN44997.1 hypothetical ... [more]
XP_008451654.1 1.0e-66 78.09 PREDICTED: uncharacterized protein LOC103492886 [Cucumis melo] [more]
XP_023549395.1 3.1e-63 76.88 uncharacterized protein LOC111807760 [Cucurbita pepo subsp. pepo] [more]
XP_022953913.1 5.2e-63 76.30 uncharacterized protein LOC111456316 [Cucurbita moschata] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C C A A A G A A A A A C G C C A A T A A T G T G G G C C G T A G A G C A T G G A A C C T T C T T C G C C T A G C A A T C A T A T G G G C A A G A A A A G G T G C C C T T C T C A A G C C A C G C T T C C T C A T G G A C C T C C G C C T C C T G C C C A A G T T C A T C A A G A G C C T C G C C C A C T C C A C C C C C C G T G C C C A C C T A C A T T A C G G C G A T C A C G A G C T C T C C T T C G A C G A A A C G C C C A T T T T C C A T G T C A A G A T G A A T C G C C C C G C C T C G A T G C G C T T C C A C T T C C C C T G C A T T A C C C C G C A C G T C G A T T T C G A A T A T G A G T T T C A T G G C A A T G T C G A T G T C G A T G T C G A T G G C G A T G G T A G T G A A A T T T G T A G C T A C G A T G G A G A G C G G A G G A G T T C G G G A T A T G A T G G T G G G G A G G A A C G A G A T G A T G A T G A C G A C G A T G A A G A A G A A G A T G G G A T T G A T T T G A G A G C T G A G A A G T T C A T A G C T G A A T T C T A T G A G C A A A T G A A A A T G C A A A G A C A G A T T T C G T T T T C G C A A T A T G A T C A T A A G A G T C T A T G A 50 100 150 200 250 300 350 400 450 500 Expect = 2.2E-12 / Score = 46.3 Score = Score = Score = Score = Sequence PF05553 mobidb-lite mobidb-lite PTHR33265 PTHR33265:SF5
IPR Term IPR Description Source Source Term Source Description Alignment
IPR008480 Protein of unknown function DUF761, plant PFAM PF05553 DUF761 coord: 142..171 e-value: 2.2E-12 score: 46.3
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 130..144
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 117..144
None No IPR available PANTHER PTHR33265 AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED coord: 6..172
None No IPR available PANTHER PTHR33265:SF5 COTTON FIBER PROTEIN coord: 6..172
Relationships
The following mRNA feature(s) are a part of this gene: