Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTTTTTATAATATATATTTCATTCAAACCTAATATTTGCTTTGTTAATGTGTCGTAAGGTTTGGTAAATAGGCATAACATGTGTGTTAAAAAAAGGAAAGAAAAAAAAAACTATAAAAATTTATCAGTTTATTGTAAAAACAATTTTTTTTTAGAAGAGGTTGAAAAACAAAATCATAACGTTAAGCAAAATGTAAAGGGCTCTCTATTGAAAAAACCATTAAAGGTGGTTACCATAAATATAGTTGTCCAACTGATATGAACAATCTTAGGACACAATTAATAATTTGTTAGAGTTTTCTAAATGTAGTTTTCCCATCAAACCAAGTATTTATATTGGGCTTTTGATTATCCAAAAATTCCAAACACCCTCACCTCTGCCATTGCCTACTAATCATCGTCTGTGAAACAAGCTTGTGCCCTCTGACTTTAACACACTTCAACCATGACAATGGCAAGAGGTTTTAAGCTCTTTCATATTGTTTTCTTAGTGTTTGCTTGGCAGTTGTTGAACAAAGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA
mRNA sequence
ATGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA
Coding sequence (CDS)
ATGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA
Protein sequence
MASVTFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPRIAPIGLETPMNKDNKALSFGLEIPKIKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNVNVSHGLKTQSTVEVDHLQW
Homology
BLAST of Lag0002593 vs. NCBI nr
Match:
KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])
HSP 1 Score: 124.8 bits (312), Expect = 8.4e-25
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TFNDVT VV+LDLNHHFSF FG G GS+AS+V+ + EAP IAP+GL+TP
Sbjct: 2 TFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDTP 61
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNV---FSH 124
+NK +K +FGLEI K I+ + VS HEI+ K G N+ +S+GGKIS K +G V +
Sbjct: 62 INKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSING 121
Query: 125 GIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNV 184
G KSS NV+VSHG T + NN S G + +K V S + N
Sbjct: 122 GKFGLKSSGNVLVSHGFETSMSKNNKGLSFG----VEIKKDH---VASLGLKAPKGKLNF 177
BLAST of Lag0002593 vs. NCBI nr
Match:
KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])
HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TF D T VV+ LNH FSF AFG G V G+I S+V Q EAP IAP+GL+T
Sbjct: 29 TFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAPAGIAPVGLQTL 88
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHG-- 124
+NK+ KA S+ L+I K IKG +S+ HE + G N+ S+GGK+S K++G+V
Sbjct: 89 INKEKKAQSYDLDIIKQIKGGGAISNDHESNLNNGENIAFSHGGKVSVKSKGSVAGSSGG 148
Query: 125 --IGATKSSNNVVVSHGVRTKKN 142
G + NN +S GV+ KK+
Sbjct: 149 KINGEMSNINNKGLSFGVKIKKD 171
BLAST of Lag0002593 vs. NCBI nr
Match:
KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])
HSP 1 Score: 99.8 bits (247), Expect = 2.9e-17
Identity = 70/163 (42.94%), Postives = 90/163 (55.21%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TF+D T VV+ LNH FSF AFG G V GSI S+V+ Q EAP IAP+GLET
Sbjct: 29 TFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVGLETM 88
Query: 65 MNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGI 124
+NK++K S+ L+I K IK G VSH HE + G N+ S+GGK+S K++G+V
Sbjct: 89 INKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVAGSSG 148
Query: 125 G-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRK 160
G K N +S GV KK+ HG L+ K
Sbjct: 149 GEINGLKRKIHNYKGLSFGVEIKKD-------HGANLGLKAHK 184
BLAST of Lag0002593 vs. NCBI nr
Match:
KAA0048677.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat protein [Cucumis melo var. makuwa])
HSP 1 Score: 91.3 bits (225), Expect = 1.0e-14
Identity = 70/188 (37.23%), Postives = 95/188 (50.53%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAP-RIAPIGLETP 64
TF+D T VV+ LNH FSF AFG G V GSI S+V Q EAP IAP+GLETP
Sbjct: 30 TFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAPVGIAPVGLETP 89
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFS---- 124
+NK +K S +I K IKG VS+ HE G N+ SY GK+S K++ +V
Sbjct: 90 INKKDKVQSDNFDIIKQIKGGGAVSNDHESKLNSGENIAFSYVGKVSVKSKNSVAGSSGG 149
Query: 125 --HGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 184
+G+ + ++ + + GV KK+ H ++ K + S +
Sbjct: 150 KINGVMSKINNKGLSLGFGVEIKKD-------HVASLGVKAHKGNA----SPGVKAHKGK 206
BLAST of Lag0002593 vs. NCBI nr
Match:
XP_022960412.1 (uncharacterized protein LOC111461146 [Cucurbita moschata])
HSP 1 Score: 82.4 bits (202), Expect = 4.8e-12
Identity = 70/187 (37.43%), Postives = 82/187 (43.85%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPRIAPIGLETPM 64
TFNDVT V+ NH FSF +FG H GI K +QSP + +
Sbjct: 28 TFNDVTGVIGKGRNHRFSFRSFGDHHIGISKF-----DHTAIQSPEVSVDDKASSFRNEI 87
Query: 65 NKDNKALSFGLEIPKIKGDITVSHGHEISTKRGINVVISYGGKISPKN------RGNVFS 124
KD G E+PKI G S GHEI KRG N+V SYGGKI P G S
Sbjct: 88 KKDGAGF-VGREVPKINGGGGFSKGHEIIRKRGGNIVYSYGGKILPVGLKRSGIGGETSS 147
Query: 125 HGIGA---------TKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHS 177
+GA KSS+NVV SHG D G + DL KS+ V SHS
Sbjct: 148 KELGADVLDGGNIRLKSSDNVVGSHGGDGSSKDLGAADLDGGKIDL---KSSGNDVGSHS 205
BLAST of Lag0002593 vs. ExPASy TrEMBL
Match:
A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TFNDVT VV+LDLNHHFSF FG G GS+AS+V+ + EAP IAP+GL+TP
Sbjct: 26 TFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDTP 85
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNV---FSH 124
+NK +K +FGLEI K I+ + VS HEI+ K G N+ +S+GGKIS K +G V +
Sbjct: 86 INKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSING 145
Query: 125 GIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNV 184
G KSS NV+VSHG T + NN S G + +K V S + N
Sbjct: 146 GKFGLKSSGNVLVSHGFETSMSKNNKGLSFG----VEIKKDH---VASLGLKAPKGKLNF 201
BLAST of Lag0002593 vs. ExPASy TrEMBL
Match:
A0A0A0KAZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 3.3e-19
Identity = 75/190 (39.47%), Postives = 103/190 (54.21%), Query Frame = 0
Query: 1 MASVTFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIG 60
+ S TF+D T VV+ LNH FSF AFG G V GSI S+V+ Q EAP IAP+G
Sbjct: 4 LKSATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVG 63
Query: 61 LETPMNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVF 120
LET +NK++K S+ L+I K IK G VSH HE + G N+ S+GGK+S K++G+V
Sbjct: 64 LETMINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVA 123
Query: 121 SHGIG-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTT 180
G K N +S GV KK+ HG L+ K + +SH
Sbjct: 124 GSSGGEINGLKRKIHNYKGLSFGVEIKKD-------HGANLGLKAHKGKVNVGVSHGGNI 183
Query: 181 TQD-NGNVNV 182
+ + G++N+
Sbjct: 184 SMNKRGSINI 186
BLAST of Lag0002593 vs. ExPASy TrEMBL
Match:
A0A5A7U057 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001040 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TF D T VV+ LNH FSF AFG G V G+I S+V Q EAP IAP+GL+T
Sbjct: 29 TFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAPAGIAPVGLQTL 88
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHG-- 124
+NK+ KA S+ L+I K IKG +S+ HE + G N+ S+GGK+S K++G+V
Sbjct: 89 INKEKKAQSYDLDIIKQIKGGGAISNDHESNLNNGENIAFSHGGKVSVKSKGSVAGSSGG 148
Query: 125 --IGATKSSNNVVVSHGVRTKKN 142
G + NN +S GV+ KK+
Sbjct: 149 KINGEMSNINNKGLSFGVKIKKD 171
BLAST of Lag0002593 vs. ExPASy TrEMBL
Match:
A0A0A0K7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 74/186 (39.78%), Postives = 99/186 (53.23%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
TF+D T VV+ LNH FSF AFG G V GSI S+V Q EAP IAP+GLET
Sbjct: 29 TFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDGSITSTVKKQIHAEAPAGIAPVGLETM 88
Query: 65 MNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGI 124
+NK++K S+ L+I K IK G VSH HE + G N+ S+GGK+S K++G+V
Sbjct: 89 INKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVAGSSG 148
Query: 125 G-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 183
G K N +S GV KK+ HG L+ K + +SH
Sbjct: 149 GEINGLKRKIHNYKGLSFGVEIKKD-------HGATLGLKAHKGKVNVGVSH-------G 200
BLAST of Lag0002593 vs. ExPASy TrEMBL
Match:
A0A5A7U318 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001070 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 5.0e-15
Identity = 70/188 (37.23%), Postives = 95/188 (50.53%), Query Frame = 0
Query: 5 TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAP-RIAPIGLETP 64
TF+D T VV+ LNH FSF AFG G V GSI S+V Q EAP IAP+GLETP
Sbjct: 30 TFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAPVGIAPVGLETP 89
Query: 65 MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFS---- 124
+NK +K S +I K IKG VS+ HE G N+ SY GK+S K++ +V
Sbjct: 90 INKKDKVQSDNFDIIKQIKGGGAVSNDHESKLNSGENIAFSYVGKVSVKSKNSVAGSSGG 149
Query: 125 --HGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 184
+G+ + ++ + + GV KK+ H ++ K + S +
Sbjct: 150 KINGVMSKINNKGLSLGFGVEIKKD-------HVASLGVKAHKGNA----SPGVKAHKGK 206
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8646351.1 | 8.4e-25 | 45.95 | hypothetical protein Csa_023818, partial [Cucumis sativus] | [more] |
KAA0048674.1 | 1.3e-17 | 44.06 | Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro... | [more] |
KAE8646352.1 | 2.9e-17 | 42.94 | hypothetical protein Csa_015951, partial [Cucumis sativus] | [more] |
KAA0048677.1 | 1.0e-14 | 37.23 | Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat pro... | [more] |
XP_022960412.1 | 4.8e-12 | 37.43 | uncharacterized protein LOC111461146 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K5J0 | 4.1e-25 | 45.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1 | [more] |
A0A0A0KAZ8 | 3.3e-19 | 39.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1 | [more] |
A0A5A7U057 | 6.3e-18 | 44.06 | Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... | [more] |
A0A0A0K7W7 | 6.3e-18 | 39.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1 | [more] |
A0A5A7U318 | 5.0e-15 | 37.23 | Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... | [more] |
Match Name | E-value | Identity | Description | |