Lag0002593 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002593
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAnkyrin repeat protein
Locationchr4: 44052727 .. 44053844 (-)
RNA-Seq ExpressionLag0002593
SyntenyLag0002593
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTTTTTATAATATATATTTCATTCAAACCTAATATTTGCTTTGTTAATGTGTCGTAAGGTTTGGTAAATAGGCATAACATGTGTGTTAAAAAAAGGAAAGAAAAAAAAAACTATAAAAATTTATCAGTTTATTGTAAAAACAATTTTTTTTTAGAAGAGGTTGAAAAACAAAATCATAACGTTAAGCAAAATGTAAAGGGCTCTCTATTGAAAAAACCATTAAAGGTGGTTACCATAAATATAGTTGTCCAACTGATATGAACAATCTTAGGACACAATTAATAATTTGTTAGAGTTTTCTAAATGTAGTTTTCCCATCAAACCAAGTATTTATATTGGGCTTTTGATTATCCAAAAATTCCAAACACCCTCACCTCTGCCATTGCCTACTAATCATCGTCTGTGAAACAAGCTTGTGCCCTCTGACTTTAACACACTTCAACCATGACAATGGCAAGAGGTTTTAAGCTCTTTCATATTGTTTTCTTAGTGTTTGCTTGGCAGTTGTTGAACAAAGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA

mRNA sequence

ATGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA

Coding sequence (CDS)

ATGGCGAGTGTCACTTTCAACGATGTCACTAGTGTTGTTGATCTCGACCTCAATCATCATTTTTCCTTCTGTGCATTTGGATCACATGGTTTCGGGATCCTAAAAGTTGGTGGTAGTATTGCATCAAGTGTAGACATGCAGAGTCCTACCGAAGCACCACGGATTGCCCCCATTGGACTTGAAACTCCAATGAACAAAGACAATAAAGCTTTGTCTTTTGGTCTCGAAATTCCCAAGATCAAGGGTGACATAACTGTTTCTCATGGTCATGAAATAAGTACGAAGAGGGGCATCAACGTTGTTATTTCCTATGGTGGAAAAATTAGTCCGAAGAATAGAGGCAATGTTTTTTCTCATGGTATTGGAGCTACAAAGAGTAGCAACAACGTTGTTGTTTCTCATGGTGTTCGAACTAAAAAGAACGACAACAACGTTGTTTTCTCTCATGGTCCTAGACATGATCTTAGAACTAGAAAGAGCACCAGCAAACTTGTTCTTTCTCATAGCTTCACAACTACACAGGACAACGGCAATGTTAATGTTTCTCATGGTCTCAAAACTCAAAGTACTGTGGAAGTTGACCATCTGCAATGGTGA

Protein sequence

MASVTFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPRIAPIGLETPMNKDNKALSFGLEIPKIKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNVNVSHGLKTQSTVEVDHLQW
Homology
BLAST of Lag0002593 vs. NCBI nr
Match: KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 8.4e-25
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TFNDVT VV+LDLNHHFSF  FG    G     GS+AS+V+  +  EAP  IAP+GL+TP
Sbjct: 2   TFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDTP 61

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNV---FSH 124
           +NK +K  +FGLEI K I+  + VS  HEI+ K G N+ +S+GGKIS K +G V    + 
Sbjct: 62  INKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSING 121

Query: 125 GIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNV 184
           G    KSS NV+VSHG  T  + NN   S G    +  +K     V S      +   N 
Sbjct: 122 GKFGLKSSGNVLVSHGFETSMSKNNKGLSFG----VEIKKDH---VASLGLKAPKGKLNF 177

BLAST of Lag0002593 vs. NCBI nr
Match: KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TF D T VV+  LNH FSF AFG    G   V G+I S+V  Q   EAP  IAP+GL+T 
Sbjct: 29  TFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAPAGIAPVGLQTL 88

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHG-- 124
           +NK+ KA S+ L+I K IKG   +S+ HE +   G N+  S+GGK+S K++G+V      
Sbjct: 89  INKEKKAQSYDLDIIKQIKGGGAISNDHESNLNNGENIAFSHGGKVSVKSKGSVAGSSGG 148

Query: 125 --IGATKSSNNVVVSHGVRTKKN 142
              G   + NN  +S GV+ KK+
Sbjct: 149 KINGEMSNINNKGLSFGVKIKKD 171

BLAST of Lag0002593 vs. NCBI nr
Match: KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-17
Identity = 70/163 (42.94%), Postives = 90/163 (55.21%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TF+D T VV+  LNH FSF AFG    G   V GSI S+V+ Q   EAP  IAP+GLET 
Sbjct: 29  TFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVGLETM 88

Query: 65  MNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGI 124
           +NK++K  S+ L+I K IK G   VSH HE +   G N+  S+GGK+S K++G+V     
Sbjct: 89  INKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVAGSSG 148

Query: 125 G-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRK 160
           G       K  N   +S GV  KK+       HG    L+  K
Sbjct: 149 GEINGLKRKIHNYKGLSFGVEIKKD-------HGANLGLKAHK 184

BLAST of Lag0002593 vs. NCBI nr
Match: KAA0048677.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-14
Identity = 70/188 (37.23%), Postives = 95/188 (50.53%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAP-RIAPIGLETP 64
           TF+D T VV+  LNH FSF AFG    G   V GSI S+V  Q   EAP  IAP+GLETP
Sbjct: 30  TFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAPVGIAPVGLETP 89

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFS---- 124
           +NK +K  S   +I K IKG   VS+ HE     G N+  SY GK+S K++ +V      
Sbjct: 90  INKKDKVQSDNFDIIKQIKGGGAVSNDHESKLNSGENIAFSYVGKVSVKSKNSVAGSSGG 149

Query: 125 --HGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 184
             +G+ +  ++  + +  GV  KK+       H     ++  K  +    S      +  
Sbjct: 150 KINGVMSKINNKGLSLGFGVEIKKD-------HVASLGVKAHKGNA----SPGVKAHKGK 206

BLAST of Lag0002593 vs. NCBI nr
Match: XP_022960412.1 (uncharacterized protein LOC111461146 [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-12
Identity = 70/187 (37.43%), Postives = 82/187 (43.85%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPRIAPIGLETPM 64
           TFNDVT V+    NH FSF +FG H  GI K          +QSP  +           +
Sbjct: 28  TFNDVTGVIGKGRNHRFSFRSFGDHHIGISKF-----DHTAIQSPEVSVDDKASSFRNEI 87

Query: 65  NKDNKALSFGLEIPKIKGDITVSHGHEISTKRGINVVISYGGKISPKN------RGNVFS 124
            KD      G E+PKI G    S GHEI  KRG N+V SYGGKI P         G   S
Sbjct: 88  KKDGAGF-VGREVPKINGGGGFSKGHEIIRKRGGNIVYSYGGKILPVGLKRSGIGGETSS 147

Query: 125 HGIGA---------TKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHS 177
             +GA          KSS+NVV SHG      D       G + DL   KS+   V SHS
Sbjct: 148 KELGADVLDGGNIRLKSSDNVVGSHGGDGSSKDLGAADLDGGKIDL---KSSGNDVGSHS 205

BLAST of Lag0002593 vs. ExPASy TrEMBL
Match: A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TFNDVT VV+LDLNHHFSF  FG    G     GS+AS+V+  +  EAP  IAP+GL+TP
Sbjct: 26  TFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDTP 85

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNV---FSH 124
           +NK +K  +FGLEI K I+  + VS  HEI+ K G N+ +S+GGKIS K +G V    + 
Sbjct: 86  INKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSING 145

Query: 125 GIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDNGNV 184
           G    KSS NV+VSHG  T  + NN   S G    +  +K     V S      +   N 
Sbjct: 146 GKFGLKSSGNVLVSHGFETSMSKNNKGLSFG----VEIKKDH---VASLGLKAPKGKLNF 201

BLAST of Lag0002593 vs. ExPASy TrEMBL
Match: A0A0A0KAZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.3e-19
Identity = 75/190 (39.47%), Postives = 103/190 (54.21%), Query Frame = 0

Query: 1   MASVTFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIG 60
           + S TF+D T VV+  LNH FSF AFG    G   V GSI S+V+ Q   EAP  IAP+G
Sbjct: 4   LKSATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVG 63

Query: 61  LETPMNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVF 120
           LET +NK++K  S+ L+I K IK G   VSH HE +   G N+  S+GGK+S K++G+V 
Sbjct: 64  LETMINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVA 123

Query: 121 SHGIG-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTT 180
               G       K  N   +S GV  KK+       HG    L+  K    + +SH    
Sbjct: 124 GSSGGEINGLKRKIHNYKGLSFGVEIKKD-------HGANLGLKAHKGKVNVGVSHGGNI 183

Query: 181 TQD-NGNVNV 182
           + +  G++N+
Sbjct: 184 SMNKRGSINI 186

BLAST of Lag0002593 vs. ExPASy TrEMBL
Match: A0A5A7U057 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001040 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TF D T VV+  LNH FSF AFG    G   V G+I S+V  Q   EAP  IAP+GL+T 
Sbjct: 29  TFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGTITSTVKKQIRAEAPAGIAPVGLQTL 88

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHG-- 124
           +NK+ KA S+ L+I K IKG   +S+ HE +   G N+  S+GGK+S K++G+V      
Sbjct: 89  INKEKKAQSYDLDIIKQIKGGGAISNDHESNLNNGENIAFSHGGKVSVKSKGSVAGSSGG 148

Query: 125 --IGATKSSNNVVVSHGVRTKKN 142
              G   + NN  +S GV+ KK+
Sbjct: 149 KINGEMSNINNKGLSFGVKIKKD 171

BLAST of Lag0002593 vs. ExPASy TrEMBL
Match: A0A0A0K7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 74/186 (39.78%), Postives = 99/186 (53.23%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAPR-IAPIGLETP 64
           TF+D T VV+  LNH FSF AFG    G   V GSI S+V  Q   EAP  IAP+GLET 
Sbjct: 29  TFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDGSITSTVKKQIHAEAPAGIAPVGLETM 88

Query: 65  MNKDNKALSFGLEIPK-IK-GDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFSHGI 124
           +NK++K  S+ L+I K IK G   VSH HE +   G N+  S+GGK+S K++G+V     
Sbjct: 89  INKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVAGSSG 148

Query: 125 G-----ATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 183
           G       K  N   +S GV  KK+       HG    L+  K    + +SH        
Sbjct: 149 GEINGLKRKIHNYKGLSFGVEIKKD-------HGATLGLKAHKGKVNVGVSH-------G 200

BLAST of Lag0002593 vs. ExPASy TrEMBL
Match: A0A5A7U318 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001070 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-15
Identity = 70/188 (37.23%), Postives = 95/188 (50.53%), Query Frame = 0

Query: 5   TFNDVTSVVDLDLNHHFSFCAFGSHGFGILKVGGSIASSVDMQSPTEAP-RIAPIGLETP 64
           TF+D T VV+  LNH FSF AFG    G   V GSI S+V  Q   EAP  IAP+GLETP
Sbjct: 30  TFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIISTVKKQIRAEAPVGIAPVGLETP 89

Query: 65  MNKDNKALSFGLEIPK-IKGDITVSHGHEISTKRGINVVISYGGKISPKNRGNVFS---- 124
           +NK +K  S   +I K IKG   VS+ HE     G N+  SY GK+S K++ +V      
Sbjct: 90  INKKDKVQSDNFDIIKQIKGGGAVSNDHESKLNSGENIAFSYVGKVSVKSKNSVAGSSGG 149

Query: 125 --HGIGATKSSNNVVVSHGVRTKKNDNNVVFSHGPRHDLRTRKSTSKLVLSHSFTTTQDN 184
             +G+ +  ++  + +  GV  KK+       H     ++  K  +    S      +  
Sbjct: 150 KINGVMSKINNKGLSLGFGVEIKKD-------HVASLGVKAHKGNA----SPGVKAHKGK 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646351.18.4e-2545.95hypothetical protein Csa_023818, partial [Cucumis sativus][more]
KAA0048674.11.3e-1744.06Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro... [more]
KAE8646352.12.9e-1742.94hypothetical protein Csa_015951, partial [Cucumis sativus][more]
KAA0048677.11.0e-1437.23Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat pro... [more]
XP_022960412.14.8e-1237.43uncharacterized protein LOC111461146 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5J04.1e-2545.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1[more]
A0A0A0KAZ83.3e-1939.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1[more]
A0A5A7U0576.3e-1844.06Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
A0A0A0K7W76.3e-1839.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1[more]
A0A5A7U3185.0e-1537.23Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002593.1Lag0002593.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane