Lag0001932 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001932
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr4: 37218331 .. 37218944 (-)
RNA-Seq ExpressionLag0001932
SyntenyLag0001932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAAAATCTTCCAGCTCCAGGTCTCAATGGGTTCTATATCAGCAAGCTCAAGGACATTTTTTTTTTAATCTAAATCCAAATGGGATCTCAATGATGGTTCTGTAGGATTAAATTCTGGACAGACATTTGGACAAAGGAATCGCCTCTAATGATTTCTCAAAACCGCCTATACCACCTTTCGACAAGAAAAGACTTGCATGTTGATGAAGCTGGGTCGATTGAAAATCAGAGTTGGTCTTTCTTCCCTCGACGCTCCTTGCTTGATAGAGAAAGGATAATATGGAACAACATCAGCTCTAGCTTCCCAAAGCCTGTCGCCTCCAAAGGTTCAGACTCAATTCGATGGTTAACCGCTAAAGATGGTGTTTTCTCATGCGCCTCAGCTCGCTCTTCTCTTTGGGAAATGCCTAAAAAGGCTTTTTATCATCCTAATACAACAGTGTTGAATAACTTATGAGAGGCGAATATTCCTAAGAAATGCAAAATTTTCATATGGTCTGTGATTCACAGACGCCTTAACACAGCAGACAGGCTTCAAAAAAGGCTCAAAACAACAATGCTCAGCTCAAGCATCTGTCATCTTTGCAAAAGAAGTTCTGAATCATTAG

mRNA sequence

ATGGCCTCAAAATCTTCCAGCTCCAGGATTAAATTCTGGACAGACATTTGGACAAAGGAATCGCCTCTAATGATTTCTCAAAACCGCCTATACCACCTTTCGACAAGAAAAGACTTGCATGTTGATGAAGCTGGGTCGATTGAAAATCAGAGTTGGTCTTTCTTCCCTCGACGCTCCTTGCTTGATAGAGAAAGGATAATATGGAACAACATCAGCTCTAGCTTCCCAAAGCCTGTCGCCTCCAAAGGTTCAGACTCAATTCGATGGTTAACCGCTAAAGATGACGCCTTAACACAGCAGACAGGCTTCAAAAAAGGCTCAAAACAACAATGCTCAGCTCAAGCATCTGTCATCTTTGCAAAAGAAGTTCTGAATCATTAG

Coding sequence (CDS)

ATGGCCTCAAAATCTTCCAGCTCCAGGATTAAATTCTGGACAGACATTTGGACAAAGGAATCGCCTCTAATGATTTCTCAAAACCGCCTATACCACCTTTCGACAAGAAAAGACTTGCATGTTGATGAAGCTGGGTCGATTGAAAATCAGAGTTGGTCTTTCTTCCCTCGACGCTCCTTGCTTGATAGAGAAAGGATAATATGGAACAACATCAGCTCTAGCTTCCCAAAGCCTGTCGCCTCCAAAGGTTCAGACTCAATTCGATGGTTAACCGCTAAAGATGACGCCTTAACACAGCAGACAGGCTTCAAAAAAGGCTCAAAACAACAATGCTCAGCTCAAGCATCTGTCATCTTTGCAAAAGAAGTTCTGAATCATTAG

Protein sequence

MASKSSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQQCSAQASVIFAKEVLNH
Homology
[Close]
BLAST of Lag0001932 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 30/86 (34.88%), Postives = 44/86 (51.16%), Query Frame = 0 

Query: 5   SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRE 64
           ++  +I FW   W+ E  L+ +  RL+ LS  KD+ V +A +  +  W+   RR L DRE
Sbjct: 774 NNGDQISFWYSNWSIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIRFRRELNDRE 833

Query: 65  RIIWNNISSSFPKPVASKGSDSIRWL 91
           R  W  I    PKP  + GS    W+
Sbjct: 834 RNKWAKILEILPKPRYNSGSSKPTWI 859

[Close]
BLAST of Lag0001932 vs. NCBI nr
Match: XP_031744692.1 (uncharacterized protein LOC116405125 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.0e-05
Identity = 27/87 (31.03%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 12  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNI 71
           FW   W + SP   +  RL+ LST+K   +    + E   W  +PRR L   E ++W ++
Sbjct: 26  FWHSRWHELSPFTQTNPRLFALSTKKGDSIANMWNAEKADWDLYPRRPLRSVEEVLWEDM 85

Query: 72  SSSFPKPVASKGSDSIRWLTAKDDALT 99
             S P P+   G D+ RW    + + T
Sbjct: 86  KVSLP-PLPDSGFDNPRWTLNNNGSFT 111

[Close]
BLAST of Lag0001932 vs. NCBI nr
Match: KAA0055411.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22316.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-04
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 0 

Query: 5   SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRE 64
           +  + I FW D W  +SP+ +S  RLY LST K+  V++  +     W     R L + E
Sbjct: 37  NDGAAISFWLDNWNSKSPISLSTPRLYALSTNKNGSVNDFWNPILNDWDIHINRPLREHE 96

Query: 65  RIIWNNISSSFPKPVASKG 84
             +W++I SS   P++++G
Sbjct: 97  TQLWHDIKSSLIVPLSNRG 115

The following BLAST results are available for this feature:
BLAST of Lag0001932 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046762.12.7e-0534.88LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_031744692.18.0e-0531.03uncharacterized protein LOC116405125 [Cucumis sativus][more]
KAA0055411.14.0e-0432.91LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK223... [more]
BLAST of Lag0001932 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001932.1Lag0001932.1mRNA