Lag0001862 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001862
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	plant UBX domain-containing protein 11 isoform X2
Location	chr4: 36305519 .. 36309683 (-)
RNA-Seq Expression	Lag0001862
Synteny	Lag0001862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGTGAGTGAGTGAATGAGTGAGTGATATCTCTGCAAGTGAAAAAGTTTGAAGAGAATTGGAGAGAGTGAGGGAATTAAAAAAAGGAAGAATTTGGGGAGAGGGAAGGCGTGATTCAAACCAAACTGCATCACACAACTTAATAATAATCGGAGGGGGCCCACTCGAAATTCTTCTGTGTGTTTTCTTTATGGGGTTGTTGAAATTCAAGAGCAAAAATGAAAAGTTGGGGTTTTTTTTTTTTATCACTGATAGAATCTATCAGTGATAGAAAAGTTTCTATCAGTGATAGAATTAACTTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAAGTTTTCTATCACTGATAGAAAAATTTTCTATCAGTGATAGAAATCCTATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAAATTTTTCTATCACTGATAGAAAGTTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAATATTTCTATCACTGATAGAAAAATTATCTATCAGTGATAGAAGATTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAAACGTTTCTATCACTGATAGAAAGTTAATTCTATCAATGATAGAAAAGCGTTCTATCAGTGATAGAAAATTTCTATCACTGATAGAAAGTTTTCTATCACTGATAGAAATAATTCTATTAGTGATAGAAGTTTCTATCACTGATTTCTATCACTGATGGATTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAAAGTGATAGAAAAACTTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAATACTTCTATCACTGATAGATTCTATCAGTGATAGAAGTTTTTCTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATCAGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATCAGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCAGATAGAAAGTTCTCTCAACTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAGTTTTTCTATCACCGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAAAACTTTCTATCTGATAGAAAAAACTTTCTATCAGATAGAAACCTACCAAAACAAAAATTGAGGAAACCACCAGATGCGCGCGCAAGGGCAAGGGCAAAATAGGGATATAAAAAATTAATTAAAAAATTTTGCCATATTTGCAAATATTTTAAAAAATTGCTAAAATTGCAATTATTTACCCTAATTTTGCCACCCATTACAATTATCCTAAATTTTATACTCATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATTGATTTGTTCAAAAAACAATTTAATAATTTTTTTTTAAAAAAATGTATCAACTTTACTTTTTTTTCCCCATTTTTTTCGAACAACTTACTAATTTTTACTTAATACCTGATTAAAAAAGTTAAATTTAATAACAGGTTAAAATAAAATGCAAATTATGAATTTGTATTCTTAAGGTCAATTTTGCCGAACTATAAGATAAACTTAGATAAATATTACTATTTAAATCTTAAATTTGAAAAAACTACAATAAATTTTGTTTGAGCATTTGTTAAAATACATTCCCCACTGCTTTCAATAAATTATAAGACATATGTATCAAAATTTATAGCATTTTAAAGAAAAAATTATTGTAGTATTTTTTATTTATTATTATTTTTTTTGGTTAAAAATTGTGAGATTTGACCAAGTTATTAATCCTTAATTGTACAGTAATCAAACTTAAATATGTAAGCATGTAATTGACATATACCCTTGACTAAGAGGTTAGAAGTTCAAATCTATCTCTTATATCCAAATGTTGTTGAACTAGAAAAAATAGAACGGTTACTTCATAAAACTAACCATTTAGCTCATTAACTTTCAATTTTGCAACAATTTAGTTCTCATCATGAAAATTTCCATCGAAATTAAAGTGTCAAGTTTTACTATGTAATGACTTAATCCTTCTGATTTACAAATTACACATGGTCCTAAATCTTCAAGAATGGTATCATAATTTTAAAAAATTTAATATAAGTCTTCAAACTTTCATTTTTGTGTCTAATATGTAATTCAACTTACCTATTCGACATCATTTAAAACTCTCCAACCCACTAGATACAAAACTAGAACATTAAGATCTCAATTAATAGACATAAAATTCAATTTTATATTTAATGGATTGATTGATTTTTAAAAATTTGGAATATGTTAAAGACCTATAAAGACTATTTTTTTTTTTTTTTTTTGAAAAGGACTAAAATTTAAATTTATATCTAATAGATTGATTGAATTTAAAAAAATCTGAAATATGTTAAATATATATTAAACACAAAGTTGAAAGTTAAAATTTAAGAGCTTAGTTAAACACAAAATTGAAAGTTTTTTTTTTTTTTTTGTTATTTTATTTTATTTTATTTTTTATGGAATTAAATTAACACAGGATTCAAGATTAAACTTGTAAGTTTAATCATTTTTTTATTTGTTTTTTCAATTACCCCGTTTTCTTCTTCGATCGTCTGTGCTCGCGACTGCTCATCGGTTGTCAACCGCCAATCAGCCGATCCTTCTGAAATTTCTTAGTCCAATCTTCACTGAATTTGGTTCAGGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGGTCTGTGTGAAGTGGATGGATGGATGGAAATTTAAGGGGTCGAATGAAAACGGGTTTTGATTTTATCACGGGGGAGCTAATCGAATTTTGTTTAGTTTTTCTTGGGTGGTTTAGTTTGAAAATTTGACTCTCTTTGTATTTCTTACTGGGTGCGATTTTGCCTTATCGTCATTGTTGTTTACTGGTTATCTGTGCAGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGTAAACTTTTATTCGTTCAACCTTTCTCAATGGTTTTGCTGATTTGAATATCTTTTAGATGGGAGGAGGAAAGACAATTTTTGTTACTCTTTAAGTAGTGGGGGAGTAACTTGTCGAAATGTTGGTGTATATCACTAGTTTCTCCCTTTTTCCCCGTATGTTTCTACTTCAATATAGCTAACCTAGAATTACTACTTGGAAAATCACTTTGTTTGTTCATTCCTTTTTGTTATGGTTACCAGGATAG

mRNA sequence

ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGATAG

Coding sequence (CDS)

ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGATAG

Protein sequence

MPFCALKISSVFSITRLTFLSASSSISITLRSDFYHSPSSSPTFIFSHPLLHILSASSSISISIIDLVIISSSPCSCPNSPFDDTHDMSEDDPDPDSDLPNMLTDNDEDDVAGEMRRMHEFFREAYAVIGISVYLLRHQFGFAQNLRLELTMEQSISSLAFKGSIAEAISESKNQRKLFVVYISG

Homology

[Close]

BLAST of Lag0001862 vs. NCBI nr
Match: XP_038884781.1 (plant UBX domain-containing protein 11 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-06
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI+ESKNQRKLF+VYISG
Sbjct: 1   MEQSISSLAFKGSIAEAIAESKNQRKLFLVYISG 34

[Close]

BLAST of Lag0001862 vs. NCBI nr
Match: XP_023004995.1 (plant UBX domain-containing protein 11 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGS+AEAI ESKNQRKLFVVYISG
Sbjct: 1   MEQSISSLAFKGSVAEAIVESKNQRKLFVVYISG 34

[Close]

BLAST of Lag0001862 vs. NCBI nr
Match: XP_023004994.1 (plant UBX domain-containing protein 11 isoform X1 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGS+AEAI ESKNQRKLFVVYISG
Sbjct: 1   MEQSISSLAFKGSVAEAIVESKNQRKLFVVYISG 34

[Close]

BLAST of Lag0001862 vs. NCBI nr
Match: TYK17101.1 (plant UBX domain-containing protein 11 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI ESKNQRKLF+VYISG
Sbjct: 1   MEQSISSLAFKGSIAEAIVESKNQRKLFLVYISG 34

[Close]

BLAST of Lag0001862 vs. NCBI nr
Match: XP_008445691.2 (PREDICTED: plant UBX domain-containing protein 11 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI ESKNQRKLF+VYISG
Sbjct: 61  MEQSISSLAFKGSIAEAIVESKNQRKLFLVYISG 94

[Close]

BLAST of Lag0001862 vs. ExPASy Swiss-Prot
Match: Q9ZW74 (Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-04
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 154 QSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           +++SSL FKGS+ EAI E+K ++KLFVVYISG
Sbjct: 2   EALSSLTFKGSLPEAIFEAKGKKKLFVVYISG 33

The following BLAST results are available for this feature:

BLAST of Lag0001862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884781.1	2.8e-06	94.12	plant UBX domain-containing protein 11 [Benincasa hispida]	[more]
XP_023004995.1	3.6e-06	94.12	plant UBX domain-containing protein 11 isoform X2 [Cucurbita maxima]	[more]
XP_023004994.1	3.6e-06	94.12	plant UBX domain-containing protein 11 isoform X1 [Cucurbita maxima]	[more]
TYK17101.1	6.2e-06	94.12	plant UBX domain-containing protein 11 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008445691.2	6.2e-06	94.12	PREDICTED: plant UBX domain-containing protein 11 isoform X1 [Cucumis melo]	[more]

BLAST of Lag0001862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW74	6.1e-04	65.63	Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001862.1	Lag0001862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016757	glycosyltransferase activity