Lag0001103 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001103
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF789)
Location	chr4: 24523802 .. 24524557 (+)
RNA-Seq Expression	Lag0001103
Synteny	Lag0001103

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGTCGTTTGCAGCAGCAGCAGCTGAAGCAGAGTGCCTTGGATTCCAAGGAGGTTGTCGCTGCTGCTGCTAGGATCAATGATTGCTCAAGCGAATTTTTTTTCACTTGATGATGTTCCCGTTTTGTTTTTTTCAGGTTAATTGTTTTGTGTGGACTTTGGTTGAGTTTTCTTCCTGGACTTAAAAGTACGTTATTGTGGTGGAAATTGATGTTGTTTGTATAAAGATTAGCCTTCGCGTATGAACTTGTGTGATGTGTGTAGAGAGAAATCAGTAATGGTTCTTAGGTTCGAGAAGATTTTGTGGTTTAGTTGATTAATCTTGACGAAGATGTTGGTTTTTTCTTCAATGGATTTCTTTAGTTTTATTCTTAAGGACCCTCCCCCTTCCCTTTTGTACTTCTACATTGTCTCTGTGATCACTATAACTTTAGAGTGTTAGTTTCTTCTTTTAATTTCCATACTTTTTTGCTTCCCGATGATATCAATGACCAGTTAAGTTCTAAACGGATCTCAGCTAAGTTTATTTTCTTTAGAATCTGAATTTACTTCAGTTTGTCAAATCCTTAAATTGCTCCTATAATTGGCTTTTTGGGCGTTAAACAGACGAGCCAGAGGGGATGGAGAACTCGTGAAGCCTCAGAGGCACCTCCTTATTTTGTGCTCGGTGATCTCTGGGAATCTTTCAAGGAATGGAGTGTATACGGAGCGGGTATCCCTCTATTGTTAAATGGTAGTGATTCTGTAGTATAG

mRNA sequence

ATGCGGCGTCGTTTGCAGCAGCAGCAGCTGAAGCAGAGTGCCTTGGATTCCAAGGAGACGAGCCAGAGGGGATGGAGAACTCGTGAAGCCTCAGAGGCACCTCCTTATTTTGTGCTCGGTGATCTCTGGGAATCTTTCAAGGAATGGAGTGTATACGGAGCGGGTATCCCTCTATTGTTAAATGGTAGTGATTCTGTAGTATAG

Coding sequence (CDS)

ATGCGGCGTCGTTTGCAGCAGCAGCAGCTGAAGCAGAGTGCCTTGGATTCCAAGGAGACGAGCCAGAGGGGATGGAGAACTCGTGAAGCCTCAGAGGCACCTCCTTATTTTGTGCTCGGTGATCTCTGGGAATCTTTCAAGGAATGGAGTGTATACGGAGCGGGTATCCCTCTATTGTTAAATGGTAGTGATTCTGTAGTATAG

Protein sequence

MRRRLQQQQLKQSALDSKETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV

Homology

[Close]

BLAST of Lag0001103 vs. NCBI nr
Match: XP_022972280.1 (uncharacterized protein LOC111470860 isoform X1 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 19  ETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV 68
           +TS +GWR RE SEAPPYFVLGDLWESFKEWS YGAGIPLLLNGSDSVV
Sbjct: 115 KTSLKGWRNREVSEAPPYFVLGDLWESFKEWSAYGAGIPLLLNGSDSVV 163

[Close]

BLAST of Lag0001103 vs. NCBI nr
Match: XP_022946432.1 (uncharacterized protein LOC111450487 isoform X1 [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 19  ETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV 68
           +TS +GWR RE SEAPPYFVLGDLWESFKEWS YGAGIPLLLNGSDSVV
Sbjct: 120 KTSLKGWRNREVSEAPPYFVLGDLWESFKEWSAYGAGIPLLLNGSDSVV 168

[Close]

BLAST of Lag0001103 vs. NCBI nr
Match: XP_022979801.1 (uncharacterized protein LOC111479394 isoform X1 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 19  ETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV 68
           +T  RGWRTRE SEAPPYFVLGDLWES+KEWS YGAGIPLLLNGSDSVV
Sbjct: 112 KTRLRGWRTREVSEAPPYFVLGDLWESYKEWSAYGAGIPLLLNGSDSVV 160

[Close]

BLAST of Lag0001103 vs. NCBI nr
Match: XP_022946439.1 (uncharacterized protein LOC111450487 isoform X2 [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 19  ETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV 68
           +TS +GWR RE SEAPPYFVLGDLWESFKEWS YGAGIPLLLNGSDSVV
Sbjct: 120 KTSLKGWRNREVSEAPPYFVLGDLWESFKEWSAYGAGIPLLLNGSDSVV 168

[Close]

BLAST of Lag0001103 vs. NCBI nr
Match: XP_022979802.1 (uncharacterized protein LOC111479394 isoform X2 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 19  ETSQRGWRTREASEAPPYFVLGDLWESFKEWSVYGAGIPLLLNGSDSVV 68
           +T  RGWRTRE SEAPPYFVLGDLWES+KEWS YGAGIPLLLNGSDSVV
Sbjct: 112 KTRLRGWRTREVSEAPPYFVLGDLWESYKEWSAYGAGIPLLLNGSDSVV 160

The following BLAST results are available for this feature:

BLAST of Lag0001103 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972280.1	8.3e-17	87.76	uncharacterized protein LOC111470860 isoform X1 [Cucurbita maxima]	[more]
XP_022946432.1	8.3e-17	87.76	uncharacterized protein LOC111450487 isoform X1 [Cucurbita moschata]	[more]
XP_022979801.1	8.3e-17	87.76	uncharacterized protein LOC111479394 isoform X1 [Cucurbita maxima]	[more]
XP_022946439.1	8.3e-17	87.76	uncharacterized protein LOC111450487 isoform X2 [Cucurbita moschata]	[more]
XP_022979802.1	8.3e-17	87.76	uncharacterized protein LOC111479394 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0001103 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008507	Protein of unknown function DUF789	PFAM	PF05623	DUF789	coord: 23..67 e-value: 1.9E-10 score: 40.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR31343:SF8	OS07G0246600 PROTEIN	coord: 18..67
None	No IPR available	PANTHER	PTHR31343	T15D22.8	coord: 18..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001103.1	Lag0001103.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane