Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGGTACAAAGCCAATGCCTACTGCAACATCAGACAAATGGCCAAAATACTGACCGGTGTTTAAGGCTGAAACATGACATCCAAGACCTTATTGATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
mRNA sequence
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
Coding sequence (CDS)
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
Protein sequence
MINNMSRQYHYYFDFQGMITYDSLIEAATRIEDAIYNGTHGSQVKEADPKGKKIALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPHLRHQILFLLEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFDESPSCSDPTDLKPLPASLWMDSDELDQYGTNDDMDFVNNEEAQHMASKSHRDPVLRMQGQTHVSLDTSPSPPVKIIFHIRMAKTIT
Homology
BLAST of Lag0000997 vs. NCBI nr
Match:
CAN83305.1 (hypothetical protein VITISV_008192 [Vitis vinifera])
HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08
Identity = 46/91 (50.55%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 144 MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTIS 203
MIEPT SSWDPSL +TP GE+GET GRDM GIRET + P H+ S T
Sbjct: 1 MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60
Query: 204 QPLNNPSNYSRKAQKVKHLSFTLARIPQPFD 230
QPL SFTLA IPQPFD
Sbjct: 61 QPLQ-----LLPESPASDESFTLAHIPQPFD 86
BLAST of Lag0000997 vs. NCBI nr
Match:
KAF5932778.1 (hypothetical protein HYC85_028949 [Camellia sinensis])
HSP 1 Score: 62.0 bits (149), Expect = 1.1e-05
Identity = 63/184 (34.24%), Postives = 84/184 (45.65%), Query Frame = 0
Query: 36 YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
++G GS Q P+G++ ALG K + +KP PR PL
Sbjct: 63 FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLP 122
Query: 96 ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
L + K Y + H LRH+I L++K I PP ++PNVTTNPLP H
Sbjct: 123 NPLPPSYDPAKYCAYHQQHGHYTDRCFRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 182
Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEF 191
PPP IN I+ +S+DPS+ ITP+ K E TD M+ I TR P +
Sbjct: 183 NQAPPPRRINFIQTGVASYDPSIYITPSHLPKPEVSLPDCTDFLCMVDISTTRPEPTVVT 235
BLAST of Lag0000997 vs. NCBI nr
Match:
KAF5931647.1 (hypothetical protein HYC85_027818 [Camellia sinensis])
HSP 1 Score: 59.7 bits (143), Expect = 5.3e-05
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query: 71 VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
+KP P+ PL L + K Y + H LRH+I L++K I PP
Sbjct: 556 LKPLEPK---PLPNPLPPSYDPSKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP-- 615
Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP 161
++PNVTTNPLPTH PPP IN I+ +S+DPS+ ITP
Sbjct: 616 DQPNVTTNPLPTHNQAPPPKRINFIQTGVASYDPSIYITP 650
BLAST of Lag0000997 vs. NCBI nr
Match:
KAF5933751.1 (hypothetical protein HYC85_029922 [Camellia sinensis])
HSP 1 Score: 59.3 bits (142), Expect = 6.9e-05
Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 0
Query: 36 YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
++GT GS Q P+G++ ALG K + + L P P PP
Sbjct: 650 FSGTSGSDNQASRFQPRGQRTFTPLHMPLTKALGVLIKKNHLKPLEPRPP--PNPLPP-- 709
Query: 96 ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
+ K Y + H LRH+I L++K I PP ++PNVTTNPLP H
Sbjct: 710 -----SYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 769
Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
PPP IN I+ +S+DPS+ ITP+
Sbjct: 770 NQAPPPRRINFIQTGVASYDPSIYITPS 786
BLAST of Lag0000997 vs. NCBI nr
Match:
KAF5934569.1 (hypothetical protein HYC85_030740 [Camellia sinensis])
HSP 1 Score: 58.9 bits (141), Expect = 9.0e-05
Identity = 52/148 (35.14%), Postives = 71/148 (47.97%), Query Frame = 0
Query: 36 YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
++G GS Q P+G++ ALG K + +KP PR PL
Sbjct: 603 FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLT 662
Query: 96 ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
L + K Y + H LRH+I L++K I PP ++PNVTTNPLP H
Sbjct: 663 NPLPPSYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 722
Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
PPP IN I+ +S+DPS+ ITP+
Sbjct: 723 NQAPPPRRINFIQTGVASYDPSIYITPS 739
BLAST of Lag0000997 vs. ExPASy TrEMBL
Match:
A5BJ71 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008192 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 46/91 (50.55%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 144 MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTIS 203
MIEPT SSWDPSL +TP GE+GET GRDM GIRET + P H+ S T
Sbjct: 1 MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60
Query: 204 QPLNNPSNYSRKAQKVKHLSFTLARIPQPFD 230
QPL SFTLA IPQPFD
Sbjct: 61 QPLQ-----LLPESPASDESFTLAHIPQPFD 86
BLAST of Lag0000997 vs. ExPASy TrEMBL
Match:
A0A7J7FYW8 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_028949 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 5.1e-06
Identity = 63/184 (34.24%), Postives = 84/184 (45.65%), Query Frame = 0
Query: 36 YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
++G GS Q P+G++ ALG K + +KP PR PL
Sbjct: 63 FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLP 122
Query: 96 ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
L + K Y + H LRH+I L++K I PP ++PNVTTNPLP H
Sbjct: 123 NPLPPSYDPAKYCAYHQQHGHYTDRCFRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 182
Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEF 191
PPP IN I+ +S+DPS+ ITP+ K E TD M+ I TR P +
Sbjct: 183 NQAPPPRRINFIQTGVASYDPSIYITPSHLPKPEVSLPDCTDFLCMVDISTTRPEPTVVT 235
BLAST of Lag0000997 vs. ExPASy TrEMBL
Match:
A0A7J7FU58 (Ribonuclease H OS=Camellia sinensis OX=4442 GN=HYC85_027818 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 2.5e-05
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query: 71 VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
+KP P+ PL L + K Y + H LRH+I L++K I PP
Sbjct: 556 LKPLEPK---PLPNPLPPSYDPSKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP-- 615
Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP 161
++PNVTTNPLPTH PPP IN I+ +S+DPS+ ITP
Sbjct: 616 DQPNVTTNPLPTHNQAPPPKRINFIQTGVASYDPSIYITP 650
BLAST of Lag0000997 vs. ExPASy TrEMBL
Match:
A0A7J7G0M1 (Reverse transcriptase OS=Camellia sinensis OX=4442 GN=HYC85_029922 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 0
Query: 36 YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
++GT GS Q P+G++ ALG K + + L P P PP
Sbjct: 650 FSGTSGSDNQASRFQPRGQRTFTPLHMPLTKALGVLIKKNHLKPLEPRPP--PNPLPP-- 709
Query: 96 ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
+ K Y + H LRH+I L++K I PP ++PNVTTNPLP H
Sbjct: 710 -----SYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 769
Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
PPP IN I+ +S+DPS+ ITP+
Sbjct: 770 NQAPPPRRINFIQTGVASYDPSIYITPS 786
BLAST of Lag0000997 vs. ExPASy TrEMBL
Match:
A0A7J7G0P3 (Retrotrans_gag domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_029942 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 4.3e-05
Identity = 52/138 (37.68%), Postives = 65/138 (47.10%), Query Frame = 0
Query: 71 VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
+KP PR PL L K Y + H LRH+I L++K I PP
Sbjct: 548 LKPLEPR---PLPNPLPPSHNPAKYCAYHQQHGHDTDQCFRLRHEIQDLVDKNVILPP-- 607
Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMI 190
+PNVTTNPLPTH PPP +N I+ S+DPS+ ITP K E TD M+
Sbjct: 608 EKPNVTTNPLPTHNQTPPPKRVNRIQTGVVSYDPSIYITPTHLPKPEVLLPDCTDSLCML 667
Query: 191 GIRETRLSPHLEFTCSGG 192
I T+ P + GG
Sbjct: 668 DISTTQPEPTVVTIEDGG 680
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
CAN83305.1 | 1.3e-08 | 50.55 | hypothetical protein VITISV_008192 [Vitis vinifera] | [more] |
KAF5932778.1 | 1.1e-05 | 34.24 | hypothetical protein HYC85_028949 [Camellia sinensis] | [more] |
KAF5931647.1 | 5.3e-05 | 42.00 | hypothetical protein HYC85_027818 [Camellia sinensis] | [more] |
KAF5933751.1 | 6.9e-05 | 34.46 | hypothetical protein HYC85_029922 [Camellia sinensis] | [more] |
KAF5934569.1 | 9.0e-05 | 35.14 | hypothetical protein HYC85_030740 [Camellia sinensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A5BJ71 | 6.5e-09 | 50.55 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008192 PE=4 SV=1 | [more] |
A0A7J7FYW8 | 5.1e-06 | 34.24 | Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_028949 PE=4 SV=1 | [more] |
A0A7J7FU58 | 2.5e-05 | 42.00 | Ribonuclease H OS=Camellia sinensis OX=4442 GN=HYC85_027818 PE=4 SV=1 | [more] |
A0A7J7G0M1 | 3.3e-05 | 34.46 | Reverse transcriptase OS=Camellia sinensis OX=4442 GN=HYC85_029922 PE=4 SV=1 | [more] |
A0A7J7G0P3 | 4.3e-05 | 37.68 | Retrotrans_gag domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_0... | [more] |
Match Name | E-value | Identity | Description | |