Lag0000997 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000997
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 21677581 .. 21678625 (+)
RNA-Seq ExpressionLag0000997
SyntenyLag0000997
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGGTACAAAGCCAATGCCTACTGCAACATCAGACAAATGGCCAAAATACTGACCGGTGTTTAAGGCTGAAACATGACATCCAAGACCTTATTGATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

mRNA sequence

ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

Coding sequence (CDS)

ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

Protein sequence

MINNMSRQYHYYFDFQGMITYDSLIEAATRIEDAIYNGTHGSQVKEADPKGKKIALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPHLRHQILFLLEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFDESPSCSDPTDLKPLPASLWMDSDELDQYGTNDDMDFVNNEEAQHMASKSHRDPVLRMQGQTHVSLDTSPSPPVKIIFHIRMAKTIT
Homology
BLAST of Lag0000997 vs. NCBI nr
Match: CAN83305.1 (hypothetical protein VITISV_008192 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08
Identity = 46/91 (50.55%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 144 MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTIS 203
           MIEPT SSWDPSL +TP GE+GET GRDM GIRET  + P    H+    S      T  
Sbjct: 1   MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60

Query: 204 QPLNNPSNYSRKAQKVKHLSFTLARIPQPFD 230
           QPL                SFTLA IPQPFD
Sbjct: 61  QPLQ-----LLPESPASDESFTLAHIPQPFD 86

BLAST of Lag0000997 vs. NCBI nr
Match: KAF5932778.1 (hypothetical protein HYC85_028949 [Camellia sinensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-05
Identity = 63/184 (34.24%), Postives = 84/184 (45.65%), Query Frame = 0

Query: 36  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
           ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL 
Sbjct: 63  FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLP 122

Query: 96  ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
             L   +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H
Sbjct: 123 NPLPPSYDPAKYCAYHQQHGHYTDRCFRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 182

Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEF 191
              PPP  IN I+   +S+DPS+ ITP+   K E      TD   M+ I  TR  P +  
Sbjct: 183 NQAPPPRRINFIQTGVASYDPSIYITPSHLPKPEVSLPDCTDFLCMVDISTTRPEPTVVT 235

BLAST of Lag0000997 vs. NCBI nr
Match: KAF5931647.1 (hypothetical protein HYC85_027818 [Camellia sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-05
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 71  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
           +KP  P+   PL   L   +   K   Y +   H       LRH+I  L++K  I PP  
Sbjct: 556 LKPLEPK---PLPNPLPPSYDPSKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP-- 615

Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP 161
           ++PNVTTNPLPTH   PPP  IN I+   +S+DPS+ ITP
Sbjct: 616 DQPNVTTNPLPTHNQAPPPKRINFIQTGVASYDPSIYITP 650

BLAST of Lag0000997 vs. NCBI nr
Match: KAF5933751.1 (hypothetical protein HYC85_029922 [Camellia sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-05
Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 0

Query: 36  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
           ++GT GS  Q     P+G++           ALG   K + +  L    P  P   PP  
Sbjct: 650 FSGTSGSDNQASRFQPRGQRTFTPLHMPLTKALGVLIKKNHLKPLEPRPP--PNPLPP-- 709

Query: 96  ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
                 +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H
Sbjct: 710 -----SYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 769

Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
              PPP  IN I+   +S+DPS+ ITP+
Sbjct: 770 NQAPPPRRINFIQTGVASYDPSIYITPS 786

BLAST of Lag0000997 vs. NCBI nr
Match: KAF5934569.1 (hypothetical protein HYC85_030740 [Camellia sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-05
Identity = 52/148 (35.14%), Postives = 71/148 (47.97%), Query Frame = 0

Query: 36  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
           ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL 
Sbjct: 603 FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLT 662

Query: 96  ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
             L   +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H
Sbjct: 663 NPLPPSYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 722

Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
              PPP  IN I+   +S+DPS+ ITP+
Sbjct: 723 NQAPPPRRINFIQTGVASYDPSIYITPS 739

BLAST of Lag0000997 vs. ExPASy TrEMBL
Match: A5BJ71 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008192 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 46/91 (50.55%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 144 MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTIS 203
           MIEPT SSWDPSL +TP GE+GET GRDM GIRET  + P    H+    S      T  
Sbjct: 1   MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60

Query: 204 QPLNNPSNYSRKAQKVKHLSFTLARIPQPFD 230
           QPL                SFTLA IPQPFD
Sbjct: 61  QPLQ-----LLPESPASDESFTLAHIPQPFD 86

BLAST of Lag0000997 vs. ExPASy TrEMBL
Match: A0A7J7FYW8 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_028949 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-06
Identity = 63/184 (34.24%), Postives = 84/184 (45.65%), Query Frame = 0

Query: 36  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
           ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL 
Sbjct: 63  FSGASGSDTQATRFQPRGQRTFTPLYMPLTKALGVLIKKNH------LKPLEPR---PLP 122

Query: 96  ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
             L   +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H
Sbjct: 123 NPLPPSYDPAKYCAYHQQHGHYTDRCFRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 182

Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEF 191
              PPP  IN I+   +S+DPS+ ITP+   K E      TD   M+ I  TR  P +  
Sbjct: 183 NQAPPPRRINFIQTGVASYDPSIYITPSHLPKPEVSLPDCTDFLCMVDISTTRPEPTVVT 235

BLAST of Lag0000997 vs. ExPASy TrEMBL
Match: A0A7J7FU58 (Ribonuclease H OS=Camellia sinensis OX=4442 GN=HYC85_027818 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-05
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 71  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
           +KP  P+   PL   L   +   K   Y +   H       LRH+I  L++K  I PP  
Sbjct: 556 LKPLEPK---PLPNPLPPSYDPSKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP-- 615

Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP 161
           ++PNVTTNPLPTH   PPP  IN I+   +S+DPS+ ITP
Sbjct: 616 DQPNVTTNPLPTHNQAPPPKRINFIQTGVASYDPSIYITP 650

BLAST of Lag0000997 vs. ExPASy TrEMBL
Match: A0A7J7G0M1 (Reverse transcriptase OS=Camellia sinensis OX=4442 GN=HYC85_029922 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 0

Query: 36  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLG 95
           ++GT GS  Q     P+G++           ALG   K + +  L    P  P   PP  
Sbjct: 650 FSGTSGSDNQASRFQPRGQRTFTPLHMPLTKALGVLIKKNHLKPLEPRPP--PNPLPP-- 709

Query: 96  ITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH 155
                 +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H
Sbjct: 710 -----SYDPAKYCAYHQQHGHDTDRCYRLRHEIQDLIDKQVIAPP--DKPNVTTNPLPPH 769

Query: 156 -AVPPPANINMIEPTFSSWDPSLLITPA 162
              PPP  IN I+   +S+DPS+ ITP+
Sbjct: 770 NQAPPPRRINFIQTGVASYDPSIYITPS 786

BLAST of Lag0000997 vs. ExPASy TrEMBL
Match: A0A7J7G0P3 (Retrotrans_gag domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_029942 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-05
Identity = 52/138 (37.68%), Postives = 65/138 (47.10%), Query Frame = 0

Query: 71  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRA 130
           +KP  PR   PL   L       K   Y +   H       LRH+I  L++K  I PP  
Sbjct: 548 LKPLEPR---PLPNPLPPSHNPAKYCAYHQQHGHDTDQCFRLRHEIQDLVDKNVILPP-- 607

Query: 131 NRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMI 190
            +PNVTTNPLPTH   PPP  +N I+    S+DPS+ ITP    K E      TD   M+
Sbjct: 608 EKPNVTTNPLPTHNQTPPPKRVNRIQTGVVSYDPSIYITPTHLPKPEVLLPDCTDSLCML 667

Query: 191 GIRETRLSPHLEFTCSGG 192
            I  T+  P +     GG
Sbjct: 668 DISTTQPEPTVVTIEDGG 680

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN83305.11.3e-0850.55hypothetical protein VITISV_008192 [Vitis vinifera][more]
KAF5932778.11.1e-0534.24hypothetical protein HYC85_028949 [Camellia sinensis][more]
KAF5931647.15.3e-0542.00hypothetical protein HYC85_027818 [Camellia sinensis][more]
KAF5933751.16.9e-0534.46hypothetical protein HYC85_029922 [Camellia sinensis][more]
KAF5934569.19.0e-0535.14hypothetical protein HYC85_030740 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5BJ716.5e-0950.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008192 PE=4 SV=1[more]
A0A7J7FYW85.1e-0634.24Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_028949 PE=4 SV=1[more]
A0A7J7FU582.5e-0542.00Ribonuclease H OS=Camellia sinensis OX=4442 GN=HYC85_027818 PE=4 SV=1[more]
A0A7J7G0M13.3e-0534.46Reverse transcriptase OS=Camellia sinensis OX=4442 GN=HYC85_029922 PE=4 SV=1[more]
A0A7J7G0P34.3e-0537.68Retrotrans_gag domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_0... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000997.1Lag0000997.1mRNA