Lag0000704 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000704
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
Locationchr4: 13661466 .. 13665303 (+)
RNA-Seq ExpressionLag0000704
SyntenyLag0000704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTCATGCATCGCTACCACATCACCGGACGGGACGATTACAAAAAGTAACTTCCTCTTTCTTCTAATTCCTTCTGTTTCTACTACTTTCTTTCTTTTATCGCTTTGAAATTGATTTGATTTGATGTAGGTATTCGACTCTCTGCCGTGGGGTTCAGAAGCTGGTTTCCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACTGAGAAGCTCCTCGAAAAGCTGTGAGTTTTCTTGAGTATAACTCCACACAAAGAAATTTTCCTACATTACATTAAGCAAGCTTCCGTTTCATTTTATTGTCTAACTGTCTTATTTTCTTTTTAATTTCAAAGATTCGATGAAATCTTATACTGCTGGTTCAAACTATTGAGTTCTGTGTTTCCATGGATCTTTTGATTTTTTACAGCAATATATGTGTTGTCAAGAAATTTATGTCTTGGCACATTGTAAGACTAGACATCTTTGATTAATGCTTAACATCTCTTCTCTCTTTTCAATGCTTATTCAAAGGAAACTGATGGTATGTGTTTTTGTCTAATTTGAAATGAGAAGCTTATTTTAACCTAGCATAGAGGCTCTCATGGTACAAGAGCCAGTTATGAGATTGAGATGCTTCGTTTGAGATCAAAAGTATATATGCAATATAAAAAGATGTTAAAAGCAGTAAACTAAATGTGAGTCAATTACACATTTTTGTTCCATAGTGTAACTTGACTGGCAAAATCTAGTTGGTTTGAAGTATCTATTTTTGACTAGGAGGGTGCTAGTTAGTTTAACGTACCTATCTTGGACTTGGATTTTCCAGCTCCAATTTCCTCGGTAGAAAAGGTCCACACTTTTGGCATCTCTGCTAAATTCATGGGAAAGAGCTTGAACCAATTGCAGGTCGTGTGTCTCTTATTGCCCAGTATTCTCAAGATCTCTAGAATAAAAGGTCTAGTTTATTAATACTTTTACACAAGGACTTAGTTGTCCATTTTACTCCTTTACCTTCCATTTTCATGGAACTGCCAACGTCCCCCATGAATTTATCTATACTATATTTTTCTAATGCTTAAGCTATTTTAAATTTAATTACTTTTGGCCCCAAGATTGAATCTTTTTAAACTATCCAAGATTTTGAGTCAACAATGGCACAGTATATCAACATTTGTCATGAGTTGGTGTAAATGTTCTTTAGTTTTATATAATGCTCTTTGTTAGTGTAAAGGTTCATCACCTTTCAAAGATTGTAGCCTTTCTACTTTATTTATACTTGGAGATCATCTTTGAAATGCACCAAAGGTGGTCATTTCATTTATCAAAAATATCTCAGTTTCATTCTAGAAAAACATTCCTCATGAGTTGCTCAAGCTTTAAGCATGAAAGGTCTAAAAGGTAGCTATTAACTATGATGGGAAAAGTGCTTTTTTGGAAGCTGGGACCATCGTGTCCAATGAAAGTGATGTCTTGGAATGTTAGAGGCGTTGGTGGGGATAAGAGGAGACTAGTGAAGGAGCTTTTGATTTTGTAATGTCCTGATATTGCTATCCTTCTAGAAACCATTCATAAGAACTACTATCGTCAGAATTTTGTTCGGAGTCTTTGGGCTTGAGTTAGTTGGGGGAAGGGGTGGTGAAATCTTTGGATGCTGTGAGAAGAGCTTTATCTTTATTGGTGACCTTTGAGTTCTCCAGGGTGGGGGTGGGTTGGGTCTTGGGTTTTGTACGACCTCCTTATTTCGAGATTTAGGAAGGCTTTGCTGGAGGAGTTATGCAATCTCTTTGGGCTTTATAGGACTAGTGGGACTTGGCTAGGGACTTAATGTGACTAGGTTCCCTTCCGAAAAATCTAATGGTGGTAGAATTTCTAGATCCATGAGGAGTTTTAACAAATAACAGCTTTAAGGATAGTAATGTTTTGGATCCCCTTTGGTGGATGGTAGGTTTACTTGGTCTAGCCTTAAAGAAAGGGAGGATTGTCATCGGTTGGATAGATTTTTGTTTTCTAAGGACTGGTTGGACTTGTTGCTCAATGCTAGAAAGCCTTGGGATCTAACCTTTGATTATTTGCCTATTTTTCTGTATTTGGGACACATTAAGTGGGGTCCTCGTCTTCTTTATGCAAAGTCCTAGTTCCGGTGCCCGAAAAGCTAGAGAAAATTATGAGGGAATTTTAAAGGGAAGGTGTTGATGAGGAGGGACCTTTGAGTTTGGACCCTTGATCCTTTAGGGGGCTTTTCTTGCCGCTCTTTTTTTTCATCTCTTGTATGTCCCTTTGTCTGTCCTAGGAAGCACGAACACGTCATATTTGACGAAGAATCTGTGTCGGACATGCAATTTTGCATGTCCTATTTTTTTATTTTTTTATTTTTTAAAAAAACGGACACGCTTGGACACGTTGGGACATGGTATTGGACACGTAGGCCCAAATCTACAGACCCAAAAGTTATGTTTAACTAAAAAAGTTAAAAAAAGAAAACCCTAATACGCACCCCTCATCGCACCAGCCGCCGCCGTCGTCTGTTTCAAAAGGCGCCGCTGGAAGTTACCTAAAAAACTCGAAGTCGCAGCCCACTAGGTTTTCTTCGTACGGTAGGTTTAACGTTTAAGTTTTTCTTTTCGGTTATTTTGGGTTTGGTGTGTAAGGGGAGAGATTACCAGCCCTCTCAAGTAATTTTTGCTGGATGCTCTGCTTATGTTCTTGTTTTCTGTTCTTTACATTTCCAATTTGCTTATTCGTGTATTGTTGTTGAATCTATCAATATCAAGCACTAGTAAAGGATTACCTTATAGGTATTTGACTTGAGAGAAATAATAGAATTTATAGGCATGTGAGAGGTCTTGGAAAGAGGTTTGAGATATTGTTAGATTTAATAGCTCTTTGTGGCCTTGGTCTCTATTTGCTAGGTCTTATTAGGTTGGATTGAAGTCATTTTCTGGTTAGTTAGTGTTTGTTTGAGCTTCTTTCGTTGAGTTGTTATTTTGTTTCCGCTTGTATATTGTTTTCATTTTGCTCAGTTTCTTTGTATTTTTTACACTATATGTTTTTCTTCAAGGCTAAAGCGATTTTAAACTTGTTGAAATTTTATTTTCCAAGAACCCAACCATTTTCTTCAAACTTATCTGAGTCTTGAATGAATGATGACATGTTAATCTAACTAACCAGAGGTGAATTAATACAAGCAGATTATATGTAGTAAACCATTTCAAGTATTATTTGCAACTTCATCTGTATTATTTTGCTCACTCTTTCCCCATGCTTCTCTCTTGAAAAACTATGTGACAGGTACAATATTGGTGTGATACCGACTCGACAGAGCTTGAATTTATGTGACCGCTTGTCCGTGTCATCTTTTTGCAGGTAAAACGAACATCCTGCGGAAAAGAATTAATTTCTTTCTACTTTGCAATGTTTACATATTTTCTATTGCTAATATAACCAATACTTCAACTCTTGCCGTTTTTGCTTTTGCTGCATATCGTTTTTACTTCAAGCCTATTTTCCCCTCTCTTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCCGAGCACTTGAGGGAAGCCGTTACATACATCGAGCAAGGGCACATTAGAGTTGGTCCAGAGACTGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTAGATTCATCAAAGATAAAGAGAAAAGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGA

mRNA sequence

ATGAGGAAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTCATGCATCGCTACCACATCACCGGACGGGACGATTACAAAAAGTATTCGACTCTCTGCCGTGGGGTTCAGAAGCTGGTTTCCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACTGAGAAGCTCCTCGAAAAGCTGTACAATATTGGTGTGATACCGACTCGACAGAGCTTGAATTTATGTGACCGCTTGTCCGTGTCATCTTTTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCCGAGCACTTGAGGGAAGCCGTTACATACATCGAGCAAGGGCACATTAGAGTTGGTCCAGAGACTGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTAGATTCATCAAAGATAAAGAGAAAAGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGA

Coding sequence (CDS)

ATGAGGAAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTCATGCATCGCTACCACATCACCGGACGGGACGATTACAAAAAGTATTCGACTCTCTGCCGTGGGGTTCAGAAGCTGGTTTCCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACTGAGAAGCTCCTCGAAAAGCTGTACAATATTGGTGTGATACCGACTCGACAGAGCTTGAATTTATGTGACCGCTTGTCCGTGTCATCTTTTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCCGAGCACTTGAGGGAAGCCGTTACATACATCGAGCAAGGGCACATTAGAGTTGGTCCAGAGACTGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTAGATTCATCAAAGATAAAGAGAAAAGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSMLKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Homology
[Close]
BLAST of Lag0000704 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 178/183 (97.27%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYS+LCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Lag0000704 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 3.8e-96
Identity = 177/183 (96.72%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYS+LCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Lag0000704 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYS++CRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Lag0000704 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 176/183 (96.17%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYS+LCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Lag0000704 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 177/183 (96.72%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYS+LCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.7e-56
Identity = 103/180 (57.22%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 103/180 (57.22%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 103/180 (57.22%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-52
Identity = 95/180 (52.78%), Postives = 140/180 (77.78%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY +GV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           E +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.2e-48
Identity = 89/183 (48.63%), Postives = 136/183 (74.32%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHREAQVMHRYHITGRDDYKKYSTLCRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL+++G++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDY 180
           ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW D+SKIKR + +YNDKLDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

The following BLAST results are available for this feature:
BLAST of Lag0000704 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041194.12.9e-9697.27U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_004153543.13.8e-9696.72U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
XP_022955364.18.4e-9696.72U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
XP_038880355.11.1e-9596.17U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
TYK23826.11.4e-9596.72U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
BLAST of Lag0000704 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y26.7e-5657.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q3T0M32.0e-5557.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q9NV312.6e-5557.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
P328994.5e-5252.78U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138355.2e-4848.63U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 2.5E-25
score: 100.1
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 7.7E-8
score: 33.1
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 2.3E-8
score: 43.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 2.2E-11
score: 43.3
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..175
e-value: 3.47101E-8
score: 46.4738
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 107..182
e-value: 7.1E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..181
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 11.77329
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..175
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000704.1Lag0000704.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding