Lag0000607 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000607
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr4: 11232914 .. 11234580 (-)
RNA-Seq Expression	Lag0000607
Synteny	Lag0000607

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTACAATTCCAAGACTATTTGATAGAACATGGAATTACGTCTCAACTCTCAGCCCCTGCTACACCACAACAAAATGGTGTATCCGAGAGGAGAAACCGAACTCTGTTAGACATGGTTCGATCAATGATGAGCTATGCTCAAGTGCCTGATTCGTTATGGGGATATGCAGTTGAGACTGTCGTATACATTTTGAACATGGTTCCCTCTAAAAGTGTTTCTAAAACACCTTATGAGCTATGGAGAGGGCGTAAAGGTAGTTTACGTCACTTCAGAGTTTGGGGATGCCCGACACACGTGTTGGTGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAAGAAGTTGGAACGACGTTCAAAACTATGTCTATTTGTAGGATATCCTAAAGAAACGAAAGGTGGTCTATTTTAAGATGCAAGTTTTGGGGAATCCCTACAGAAAAAGAAAAGAATCAGGCGCCCTAGTTTCTTTGTTTTGCATGATAGCTAGATTCCAACCTGTTAGGACTCTTAGCTAGTGTAGGGGGAAGACAAATGGAAAAAAACCGTAAAACTAATCTAGGTTAGTAAAAGAACCACTAGATAAGTTTTGAGCATGCTATTCGTTAATTTTAAGTTTCATTTTTAAAATTTCTTCATGAGTATGTTGTGCTTGCTTAGTCCACTTGCACATTTTCCGTATTTCCCTAAAGAAATTCTAAAATCATTGAGGCTAGAGCGATTCTTTTCATGCATCTTTGGAATTAATTTTGCTCGTGACTAGCAAAAGCATAAGTTTAGGGGTGTGATAGCATGCATAAATGTTGTTATTTTGTCCTTGAATTTAATAGCTTTTGATGTTCTTTATTGTGTTTTTATTATATAAATTCATTTAATTGATTAATTTTGGTCCCTAGGAGTTTTTGTGGAAATTTGGAGAAAAAGAGGATAAAAGAAGCTTATAGGTCTAATTTATTATGCACTTAGAATCTCCCAATTTGCTTATCTTAGTTGAATTCCAAGCGAAAAATGCTTTAAAATGAGTATAATATGTCTATAGATCCTCATCGGAGCTTTGGAAGCAATTTGGAGCCTAAACGAGCAAAACCGAGTGGAAAATGACCATTCTGCCCTTGGAGCTTCATCACTGTCGAGACCCTCCCTTATCAGCGTCGAGACGCCAACCATTTAAGGAAAGAATTTCAGAGATCAAGCTGGAGAGCAGCGTCTCGACGCTGCAACCTTAGCGACTCGACGTTCTATTTGTAGGAATCATGTATTGGAGCTAAATTGAGAAAATGGGATTGATCGAGTGTTCGGGACGTGAAAAGTGGCCAAAGAAACGAAGATGAATCGAAGTTCGAAGCTTTTTTATGAGTTCAATCCGAGAGCGAGCGTCAAGACGCTAGTTTTTGGACCTCTCAACGCTGGAATTTTCCTTGTTTGATTCAGGCGGCAAAAGAGCACAGCGTCAAGATGTTGTGTGTTGCCTTCTAGAGTGGGGTCAAAATATAGATAGAATTCACTTCAAAGTAGCTCTAGAATACTATGCAAGCATACACAATCCGCAACAAGTGATAAGTAAATTATCGTATCCACGGGGCTAA

mRNA sequence

ATGGACTTACAATTCCAAGACTATTTGATAGAACATGGAATTACGTCTCAACTCTCAGCCCCTGCTACACCACAACAAAATGGTGTATCCGAGAGGAGAAACCGAACTCTGTTAGACATGGTTCGATCAATGATGAGCTATGCTCAAGTGCCTGATTCGTTATGGGGATATGCAGTTGAGACTGTCGTATACATTTTGAACATGGTTCCCTCTAAAAGTGTTTCTAAAACACCTTATGAGCTATGGAGAGGGCGTAAAGGCGGCAAAAGAGCACAGCGTCAAGATGTTGTGTGTTGCCTTCTAGAGTGGGGTCAAAATATAGATAGAATTCACTTCAAAGTAGCTCTAGAATACTATGCAAGCATACACAATCCGCAACAAGTGATAAGTAAATTATCGTATCCACGGGGCTAA

Coding sequence (CDS)

ATGGACTTACAATTCCAAGACTATTTGATAGAACATGGAATTACGTCTCAACTCTCAGCCCCTGCTACACCACAACAAAATGGTGTATCCGAGAGGAGAAACCGAACTCTGTTAGACATGGTTCGATCAATGATGAGCTATGCTCAAGTGCCTGATTCGTTATGGGGATATGCAGTTGAGACTGTCGTATACATTTTGAACATGGTTCCCTCTAAAAGTGTTTCTAAAACACCTTATGAGCTATGGAGAGGGCGTAAAGGCGGCAAAAGAGCACAGCGTCAAGATGTTGTGTGTTGCCTTCTAGAGTGGGGTCAAAATATAGATAGAATTCACTTCAAAGTAGCTCTAGAATACTATGCAAGCATACACAATCCGCAACAAGTGATAAGTAAATTATCGTATCCACGGGGCTAA

Protein sequence

MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVVYILNMVPSKSVSKTPYELWRGRKGGKRAQRQDVVCCLLEWGQNIDRIHFKVALEYYASIHNPQQVISKLSYPRG

Homology

[Close]

BLAST of Lag0000607 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVE 60
           MDL+FQDY+IEHGI SQLSAP TPQQNGVSERRNRTLLDMVRSMMSYAQ+P S WGYAVE
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 61  TVVYILNMVPSKSVSKTPYELWRGRK 87
           T V+ILN VPSKSVS+TP+ELWRGRK
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRK 567

[Close]

BLAST of Lag0000607 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVE 60
           MDL+FQDY+IEHGI SQLSAP TPQQNGVSERRNRTLLDMVRSMMSYAQ+P S WGYAVE
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 415

Query: 61  TVVYILNMVPSKSVSKTPYELWRGRK 87
           T V+ILN VPSKSVS+TP+ELWRGRK
Sbjct: 416 TAVHILNNVPSKSVSETPFELWRGRK 441

[Close]

BLAST of Lag0000607 vs. NCBI nr
Match: KAA0063836.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVE 60
           MDL+FQDY+IEHGI SQLSAP TPQQNGVSERRNRTLLDMVRSMMSYAQ+P S WGYAVE
Sbjct: 92  MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 151

Query: 61  TVVYILNMVPSKSVSKTPYELWRGRK 87
           T V+ILN VPSKSVS+TP+ELWRGRK
Sbjct: 152 TTVHILNNVPSKSVSETPFELWRGRK 177

[Close]

BLAST of Lag0000607 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVE 60
           MDL+FQDY+IEHGI SQLSAP TPQQNGVSERRNRTLLDMVRSMMSYAQ+P S WGYAVE
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 415

Query: 61  TVVYILNMVPSKSVSKTPYELWRGRK 87
           T V+ILN VPSKSVS+TP+ELWRGRK
Sbjct: 416 TAVHILNNVPSKSVSETPFELWRGRK 441

[Close]

BLAST of Lag0000607 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MDLQFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVE 60
           MDL+FQDY+IEHGI SQLSAP TPQQNGVSERRNRTLLDMVRSMMSYAQ+P S WGYAVE
Sbjct: 356 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 415

Query: 61  TVVYILNMVPSKSVSKTPYELWRGRK 87
           T V+ILN VPSKSVS+TP+ELWRGRK
Sbjct: 416 TAVHILNNVPSKSVSETPFELWRGRK 441

[Close]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 7.4e-15
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 4   QFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVV 63
           + + + ++ GI+  L+ P TPQ NGVSER  RT+ +  R+M+S A++  S WG AV T  
Sbjct: 559 EMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTAT 618

Query: 64  YILNMVPSKSV---SKTPYELWRGRK 87
           Y++N +PS+++   SKTPYE+W  +K
Sbjct: 619 YLINRIPSRALVDSSKTPYEMWHNKK 644

[Close]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 4   QFQDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVV 63
           +F++Y   HGI  + + P TPQ NGV+ER NRT+++ VRSM+  A++P S WG AV+T  
Sbjct: 559 EFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTAC 618

Query: 64  YILNMVPSKSVS-KTPYELWRGRK 87
           Y++N  PS  ++ + P  +W  ++
Sbjct: 619 YLINRSPSVPLAFEIPERVWTNKE 642

[Close]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-11
Identity = 28/66 (42.42%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 6   QDYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVVYI 65
           +DYL +HGI+   S P TP+ NG+SER++R +++M  +++S+A VP + W YA    VY+
Sbjct: 580 RDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYL 639

Query: 66  LNMVPS 72
           +N +P+
Sbjct: 640 INRLPT 645

[Close]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 7   DYLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVVYIL 66
           +Y  +HGI+   S P TP+ NG+SER++R +++   +++S+A +P + W YA    VY++
Sbjct: 602 EYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLI 661

Query: 67  NMVPS 72
           N +P+
Sbjct: 662 NRLPT 666

[Close]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot
Match: Q07163 (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 8   YLIEHGITSQLSAPATPQQNGVSERRNRTLLDMVRSMMSYAQVPDSLWGYAVETVVYILN 67
           +L ++GIT   +  A  + +GV+ER NRTLLD  R+ +  + +P+ LW  A+E    + N
Sbjct: 749 FLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRN 808

Query: 68  MVPSKSVSKT 78
            + S    K+
Sbjct: 809 SLASPKSKKS 818

The following BLAST results are available for this feature:

BLAST of Lag0000607 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	2.3e-34	86.05	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK04171.1	2.3e-34	86.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063836.1	2.3e-34	86.05	gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis ...	[more]
KAA0059226.1	2.3e-34	86.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	2.3e-34	86.05	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0000607 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	7.4e-15	43.02	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.3e-14	41.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.4e-11	42.42	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.6e-09	36.92	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07163	3.4e-04	34.29	Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..100 e-value: 1.8E-21 score: 78.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..86 score: 14.169129
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000607.1	Lag0000607.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding