Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGATGCTTCTTCTTCTTCTTCTTCCAGTGGTCCGATAATCACACCCGTAGCTTCACCATCTACCCCAAATACTACACCGATTGTCACACCGATTACAAACACCCAGAATGTTCAGCCTCAAATCCCTCGACCAAATCCTCAAATTACTCGACCAAATCCCCAAAATCCTCAACAACCATTTCAACCTCAACCTTCGATTTCTACTCATCAACATTATCAAGCCTATGCCCAACCATTTTCCCCAAATTTCTATAATCCTCGTCCTCAGTTTTTCCCACCTCCACAACAGTTTTCACAAAATCAAATCCAAAATCCTATTCCATACCCAAACCCTTTTACCCCTAACCCTTACCCGACCTTACCCCAACCCTTATCGGTGAAGCTGAATGACTCGAACTTTCTCCTCTGGAAAAATCAGTTGCTGAATGCGGTGATTGCAAATGGGCTTCAAGGGTACCTCCATGGCTCTATTGCGGCTCCTCCCAGGTATCTCGATGATCAACAAACTCAACCGAATCCAGATTTTCTCCATTGGGAAAGGTACAATCGGTTTATCATGTGTTGGATATACTCTTCTCTGTCTGAGGAAAAAATGGGTGAGATAGTAAGTTTTGACTCTGCTGCTGCTATTTGGAACTCTTTGAAACGATCCTATGATTCTAAAACTACGGCTAGGATTATGGGACTCAAAACTCAACTTCAAAAAATAAAGAAGGATAACCTCTCTGTTAGTCAATATCTGTCTCAAATAAAGGAAGTAGCTGATAAATTTTCTGCAATAGGTGAGCCCATCTCTTATAGGGACCATTTAGCTCATATCTTAGATGGTCTTGGTAGTGAATACAATGCCTTTGTTACTACCATACAAAATCGGTCTGATAATCCGTCTTTAGAAGATGTTAGAAGTTTATTATTGGCATATGAGGCCCGGTTGGAAAAACAGAATGCTGTGGATCAATTGAATCTTGCCCAGGCAAATTTAAGTTCTCTTAGCCTCCAAAACAGCCGTCGGTCCAACCCCAAACCAAATCACTCCATCCCCTTTAGACCTCCCTTCAATCCACAAGCCTTTTCTCCTTTTTCCTCTCAACAACACTCTGCCTCTCCAAGCCTCTTAGGCAAACCACAAACTCAACAACTTCAAAAATGGCCTTCTCGTTTATCTTCTAACAAACCTCAATGCCAAATATGTGGCAAATTTGGGCACACTGCTTTAATTTGTCACCATAGAACTAATTTGGCCTACCAAACCCCACCTCCTCAAGCCTATTGTCCACGGTTTCCGCAACCACTCCCTCCTCTGTCCCTGATGCTTTATCCACTATGTCCACTGATTCCTATCATCCTGACGAGAATTGGTTTTTAG
mRNA sequence
ATGGCCTCTGATGCTTCTTCTTCTTCTTCTTCCAGTGGTCCGATAATCACACCCGTAGCTTCACCATCTACCCCAAATACTACACCGATTGTCACACCGATTACAAACACCCAGAATGTTCAGCCTCAAATCCCTCGACCAAATCCTCAAATTACTCGACCAAATCCCCAAAATCCTCAACAACCATTTCAACCTCAACCTTCGATTTCTACTCATCAACATTATCAAGCCTATGCCCAACCATTTTCCCCAAATTTCTATAATCCTCGTCCTCAGTTTTTCCCACCTCCACAACAGTTTTCACAAAATCAAATCCAAAATCCTATTCCATACCCAAACCCTTTTACCCCTAACCCTTACCCGACCTTACCCCAACCCTTATCGGTGAAGCTGAATGACTCGAACTTTCTCCTCTGGAAAAATCAGTTGCTGAATGCGGTGATTGCAAATGGGCTTCAAGGGTACCTCCATGGCTCTATTGCGGCTCCTCCCAGGTATCTCGATGATCAACAAACTCAACCGAATCCAGATTTTCTCCATTGGGAAAGGTACAATCGGTTTATCATGTGTTGGATATACTCTTCTCTGTCTGAGGAAAAAATGGGTGAGATAGTAAGTTTTGACTCTGCTGCTGCTATTTGGAACTCTTTGAAACGATCCTATGATTCTAAAACTACGGCTAGGATTATGGGACTCAAAACTCAACTTCAAAAAATAAAGAAGGATAACCTCTCTGTTAGTCAATATCTGTCTCAAATAAAGGAAGTAGCTGATAAATTTTCTGCAATAGGTGAGCCCATCTCTTATAGGGACCATTTAGCTCATATCTTAGATGGTCTTGGTAGTGAATACAATGCCTTTGTTACTACCATACAAAATCGGTCTGATAATCCGTCTTTAGAAGATGTTAGAAGTTTATTATTGGCATATGAGGCCCGGTTGGAAAAACAGAATGCTGTGGATCAATTGAATCTTGCCCAGGCAAATTTAAGTTCTCTTAGCCTCCAAAACAGCCGTCGGTCCAACCCCAAACCAAATCACTCCATCCCCTTTAGACCTCCCTTCAATCCACAAGCCTTTTCTCCTTTTTCCTCTCAACAACACTCTGCCTCTCCAAGCCTCTTAGGCAAACCACAAACTCAACAACTTCAAAAATGGCCTTCTCGTTTATCTTCTAACAAACCTCAATGCCAAATATGTGGCAAATTTGGGCACACTGCTTTAATTTGTCACCATAGAACTAATTTGGCCTACCAAACCCCACCTCCTCAAGCCTATTGTCCACGGTTTCCGCAACCACTCCCTCCTCTGTCCCTGATGCTTTATCCACTATGTCCACTGATTCCTATCATCCTGACGAGAATTGGTTTTTAG
Coding sequence (CDS)
ATGGCCTCTGATGCTTCTTCTTCTTCTTCTTCCAGTGGTCCGATAATCACACCCGTAGCTTCACCATCTACCCCAAATACTACACCGATTGTCACACCGATTACAAACACCCAGAATGTTCAGCCTCAAATCCCTCGACCAAATCCTCAAATTACTCGACCAAATCCCCAAAATCCTCAACAACCATTTCAACCTCAACCTTCGATTTCTACTCATCAACATTATCAAGCCTATGCCCAACCATTTTCCCCAAATTTCTATAATCCTCGTCCTCAGTTTTTCCCACCTCCACAACAGTTTTCACAAAATCAAATCCAAAATCCTATTCCATACCCAAACCCTTTTACCCCTAACCCTTACCCGACCTTACCCCAACCCTTATCGGTGAAGCTGAATGACTCGAACTTTCTCCTCTGGAAAAATCAGTTGCTGAATGCGGTGATTGCAAATGGGCTTCAAGGGTACCTCCATGGCTCTATTGCGGCTCCTCCCAGGTATCTCGATGATCAACAAACTCAACCGAATCCAGATTTTCTCCATTGGGAAAGGTACAATCGGTTTATCATGTGTTGGATATACTCTTCTCTGTCTGAGGAAAAAATGGGTGAGATAGTAAGTTTTGACTCTGCTGCTGCTATTTGGAACTCTTTGAAACGATCCTATGATTCTAAAACTACGGCTAGGATTATGGGACTCAAAACTCAACTTCAAAAAATAAAGAAGGATAACCTCTCTGTTAGTCAATATCTGTCTCAAATAAAGGAAGTAGCTGATAAATTTTCTGCAATAGGTGAGCCCATCTCTTATAGGGACCATTTAGCTCATATCTTAGATGGTCTTGGTAGTGAATACAATGCCTTTGTTACTACCATACAAAATCGGTCTGATAATCCGTCTTTAGAAGATGTTAGAAGTTTATTATTGGCATATGAGGCCCGGTTGGAAAAACAGAATGCTGTGGATCAATTGAATCTTGCCCAGGCAAATTTAAGTTCTCTTAGCCTCCAAAACAGCCGTCGGTCCAACCCCAAACCAAATCACTCCATCCCCTTTAGACCTCCCTTCAATCCACAAGCCTTTTCTCCTTTTTCCTCTCAACAACACTCTGCCTCTCCAAGCCTCTTAGGCAAACCACAAACTCAACAACTTCAAAAATGGCCTTCTCGTTTATCTTCTAACAAACCTCAATGCCAAATATGTGGCAAATTTGGGCACACTGCTTTAATTTGTCACCATAGAACTAATTTGGCCTACCAAACCCCACCTCCTCAAGCCTATTGTCCACGGTTTCCGCAACCACTCCCTCCTCTGTCCCTGATGCTTTATCCACTATGTCCACTGATTCCTATCATCCTGACGAGAATTGGTTTTTAG
Protein sequence
MASDASSSSSSSGPIITPVASPSTPNTTPIVTPITNTQNVQPQIPRPNPQITRPNPQNPQQPFQPQPSISTHQHYQAYAQPFSPNFYNPRPQFFPPPQQFSQNQIQNPIPYPNPFTPNPYPTLPQPLSVKLNDSNFLLWKNQLLNAVIANGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVDQLNLAQANLSSLSLQNSRRSNPKPNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPSRLSSNKPQCQICGKFGHTALICHHRTNLAYQTPPPQAYCPRFPQPLPPLSLMLYPLCPLIPIILTRIGF
Homology
BLAST of Lag0000600 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-115
Identity = 229/350 (65.43%), Postives = 274/350 (78.29%), Query Frame = 0
Query: 94 FPPPQQFSQNQIQNPIPYPNPFTPNPYPTLPQPLSVKLNDSNFLLWKNQLLNAVIANGLQ 153
FPPP + N + P PNPF+ NP+PTLPQPL+VKLND+NFLLWKNQLLNAVIANGL+
Sbjct: 3 FPPP---TPNFLAQP---PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLR 62
Query: 154 GYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSAAAI 213
GYL G+I PP++LD Q QPNP + WERYNR +MCWIYSSLSEEKMGE+VS ++ I
Sbjct: 63 GYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDI 122
Query: 214 WNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYRDHL 273
W+SL R YDSKTTARIMGLKT+LQ ++KD SVSQYL++IKE+ADKF+A+GEP+SYRDHL
Sbjct: 123 WSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHL 182
Query: 274 AHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVDQLNLAQANLSSL 333
AH+LDGLGSEYNAFVT+I NR+D+PSLEDVRSLLLAYEARL+KQN VDQLN+AQANL +L
Sbjct: 183 AHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNL 242
Query: 334 SLQ-NSRRSNPK---PNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPSR 393
SLQ NS+R PK PNH ++ F SP S+ Q S S+LGKPQ+ + KWP +
Sbjct: 243 SLQHNSKRPPPKFSFPNH---YKHSF---PNSPISAAQ---SQSILGKPQS--VHKWPPK 302
Query: 394 LSSNKPQCQICGKFGHTALICHHRTNLAYQTPPPQA-YCPRFPQPLPPLS 439
SS+K QCQICGK GH+A +C+HRTN+AY PQA Y P P P S
Sbjct: 303 PSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS 335
BLAST of Lag0000600 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 233.8 bits (595), Expect = 3.0e-57
Identity = 145/356 (40.73%), Postives = 198/356 (55.62%), Query Frame = 0
Query: 94 FPPP----QQFSQNQIQNPIPYPNPFTPNPYPTLPQPLSVKLNDSNFLLWKNQLLNAVIA 153
FPP + N QNP P T P P+L Q LS+KL+++N LL K+QLLN +IA
Sbjct: 4 FPPTPASNSNTTTNNNQNPAPQITQMT-LPSPSLSQSLSIKLDETNLLLRKSQLLNVIIA 63
Query: 154 NGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDS 213
NGL+ ++ ++PP+YLD Q NP+F+ W+R N+ +M WIYSSL+ +G+IV + +
Sbjct: 64 NGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYST 123
Query: 214 AAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISY 273
A IW SL Y+S + A +M L +QLQ+IKK ++ +S+YLS++K V D+F+ IGEP+SY
Sbjct: 124 ARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSY 183
Query: 274 RDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVDQLNLAQAN 333
RD L IL+GL EY+ FVT+I NRSD PSL++V SLL YE RL +++ LN QAN
Sbjct: 184 RDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN 243
Query: 334 LSSLSLQNSRRSNPKPNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPSR 393
P +P +N
Sbjct: 244 --------------------PRQPGYN--------------------------------- 303
Query: 394 LSSNKPQCQICGKFGHTALICHHRTNLAYQT---PPPQAYCPRFP-QPLPPLSLML 442
++ PQCQICGK GH AL +HRTNL Y P A+ P P Q P+S ML
Sbjct: 304 --NSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAML 303
BLAST of Lag0000600 vs. NCBI nr
Match:
GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])
HSP 1 Score: 228.8 bits (582), Expect = 9.5e-56
Identity = 111/231 (48.05%), Postives = 161/231 (69.70%), Query Frame = 0
Query: 96 PPQQFSQNQIQNPIPYPNP--FTPNPYPTLP---QPLSVKLNDSNFLLWKNQLLNAVIAN 155
PP S + IP PNP +P P +P QPL+VKL+D N+++WK QLLN VIAN
Sbjct: 15 PPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74
Query: 156 GLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSA 215
GL+ +L GS PPR+LD QQ Q NP+F W+RYNR +M WIY+S++E +G+IV + SA
Sbjct: 75 GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134
Query: 216 AAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYR 275
+ IW +L+R Y + + A + L+T LQ IKK+ L+ Y+ + + + + ++IGEP++Y
Sbjct: 135 SQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYT 194
Query: 276 DHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVD 322
DHL + L GLG +YN FVT+IQ+++ PS+E+V SLLL+Y+ARLE+Q+A D
Sbjct: 195 DHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0000600 vs. NCBI nr
Match:
GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])
HSP 1 Score: 223.4 bits (568), Expect = 4.0e-54
Identity = 132/335 (39.40%), Postives = 190/335 (56.72%), Query Frame = 0
Query: 96 PPQQFSQNQIQNPIPYPNPFTPNP-----YPTLPQPLSVKLNDSNFLLWKNQLLNAVIAN 155
PP S + IP PNP N P++ QPL+VKL+D N+++WK QLLN VIAN
Sbjct: 15 PPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74
Query: 156 GLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSA 215
GL+ +L GS PPR+LD QQ Q NP+F W+RYNR +M WIY+S++E +G+IV + SA
Sbjct: 75 GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134
Query: 216 AAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYR 275
+ IW +L+R Y + + A + L+T LQ IKK+ L+ Y+ + + + + ++IGEP++Y
Sbjct: 135 SQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYT 194
Query: 276 DHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRS-LLLAYEARLEKQNAVDQLNLAQAN 335
DHL + L GLG +YN FVT+IQ+++ PS+E+ S L + + + N
Sbjct: 195 DHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTSPTSLTRKPKFK-------------N 254
Query: 336 LSSLSLQNSRR-SNPKPNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPS 395
S+ S NS S+P+ + P ++P SP KP
Sbjct: 255 PSTNSFPNSNSYSHPRGQNR---NPSYSPNPSSP--------------KP---------- 304
Query: 396 RLSSNKPQCQICGKFGHTALICHHRTNLAYQTPPP 424
+P+CQIC K GHTA C+H TNL YQ PPP
Sbjct: 315 -----RPRCQICLKPGHTANKCYHHTNLNYQPPPP 304
BLAST of Lag0000600 vs. NCBI nr
Match:
PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])
HSP 1 Score: 219.5 bits (558), Expect = 5.8e-53
Identity = 128/309 (41.42%), Postives = 187/309 (60.52%), Query Frame = 0
Query: 83 SPNFYNPRPQFFPPPQQFSQNQIQNPIPYPNPFTPNP-YPTLPQPLSVKLNDSNFLLWKN 142
+P+ NP Q P Q+QI P P P P P++ QP ++KL+ N+L+WKN
Sbjct: 10 NPSTGNPTIQMPPTNIPNVQDQIIGAQP---PLPPLPILPSMNQPFTIKLDADNYLIWKN 69
Query: 143 QLLNAVIANGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKM 202
QLLN +IANGL+ ++ GS PPR+ D + N +++ W+R+NR IM WIY+SL++ M
Sbjct: 70 QLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVM 129
Query: 203 GEIVSFDSAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFS 262
G+IV + SA IW +L + Y S + A+I L+ +LQ ++KD L+ +Y+ + K + + +
Sbjct: 130 GQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLA 189
Query: 263 AIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVD 322
A+GEP+S +DHL ++ GL EYNAFVT+I R DN LE++ SLLL+YE RLE QNA
Sbjct: 190 AVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASA 249
Query: 323 QLNLAQANLSSLSLQNSRRSNPKPNHSIP---FRPPF--NPQAFSPFSSQQHSASPSLLG 382
QL+ QANL+ L N + +PN S P F F Q F + PS+LG
Sbjct: 250 QLSSLQANLAHL---NINKKPYRPNFSNPVGHFTQNFQNRTQQFQSHPPNSNQFQPSILG 309
Query: 383 KPQTQQLQK 386
KPQ + + +
Sbjct: 310 KPQGKHMNQ 312
BLAST of Lag0000600 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 1.8e-20
Identity = 71/310 (22.90%), Postives = 141/310 (45.48%), Query Frame = 0
Query: 130 KLNDSNFLLWKNQLLNAVIANGLQGYLHGSIAAPPRYL-DDQQTQPNPDFLHWERYNRFI 189
KL +N+L+W Q+ L G+L GS PP + D + NPD+ W+R ++ I
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84
Query: 190 MCWIYSSLSEEKMGEIVSFDSAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQ 249
+ ++S + +AA IW +L++ Y + + + L+TQL++ K ++
Sbjct: 85 YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144
Query: 250 YLSQIKEVADKFSAIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLL 309
Y+ + D+ + +G+P+ + + + +L+ L EY + I + P+L ++ LL
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204
Query: 310 AYEARLEKQNAVDQLNLAQANLSSLSLQNSRRSNPKPNHSIPFRPPFNPQAFSPFSSQQH 369
+E+++ AV + +++S +N+ +N N + +++
Sbjct: 205 NHESKI---LAVSSATVIPITANAVSHRNTTTTNNNNNGN--------------RNNRYD 264
Query: 370 SASPSLLGKPQTQQLQKWPSRLSSNKP---QCQICGKFGHTALIC---HHRTNLAYQTPP 429
+ + + KP Q + + +KP +CQICG GH+A C H + P
Sbjct: 265 NRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP 317
Query: 430 PQAYCPRFPQ 433
P + P P+
Sbjct: 325 PSPFTPWQPR 317
BLAST of Lag0000600 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 427.6 bits (1098), Expect = 6.7e-116
Identity = 229/350 (65.43%), Postives = 274/350 (78.29%), Query Frame = 0
Query: 94 FPPPQQFSQNQIQNPIPYPNPFTPNPYPTLPQPLSVKLNDSNFLLWKNQLLNAVIANGLQ 153
FPPP + N + P PNPF+ NP+PTLPQPL+VKLND+NFLLWKNQLLNAVIANGL+
Sbjct: 3 FPPP---TPNFLAQP---PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLR 62
Query: 154 GYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSAAAI 213
GYL G+I PP++LD Q QPNP + WERYNR +MCWIYSSLSEEKMGE+VS ++ I
Sbjct: 63 GYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDI 122
Query: 214 WNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYRDHL 273
W+SL R YDSKTTARIMGLKT+LQ ++KD SVSQYL++IKE+ADKF+A+GEP+SYRDHL
Sbjct: 123 WSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHL 182
Query: 274 AHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVDQLNLAQANLSSL 333
AH+LDGLGSEYNAFVT+I NR+D+PSLEDVRSLLLAYEARL+KQN VDQLN+AQANL +L
Sbjct: 183 AHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNL 242
Query: 334 SLQ-NSRRSNPK---PNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPSR 393
SLQ NS+R PK PNH ++ F SP S+ Q S S+LGKPQ+ + KWP +
Sbjct: 243 SLQHNSKRPPPKFSFPNH---YKHSF---PNSPISAAQ---SQSILGKPQS--VHKWPPK 302
Query: 394 LSSNKPQCQICGKFGHTALICHHRTNLAYQTPPPQA-YCPRFPQPLPPLS 439
SS+K QCQICGK GH+A +C+HRTN+AY PQA Y P P P S
Sbjct: 303 PSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS 335
BLAST of Lag0000600 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 1.4e-57
Identity = 145/356 (40.73%), Postives = 198/356 (55.62%), Query Frame = 0
Query: 94 FPPP----QQFSQNQIQNPIPYPNPFTPNPYPTLPQPLSVKLNDSNFLLWKNQLLNAVIA 153
FPP + N QNP P T P P+L Q LS+KL+++N LL K+QLLN +IA
Sbjct: 4 FPPTPASNSNTTTNNNQNPAPQITQMT-LPSPSLSQSLSIKLDETNLLLRKSQLLNVIIA 63
Query: 154 NGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDS 213
NGL+ ++ ++PP+YLD Q NP+F+ W+R N+ +M WIYSSL+ +G+IV + +
Sbjct: 64 NGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYST 123
Query: 214 AAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISY 273
A IW SL Y+S + A +M L +QLQ+IKK ++ +S+YLS++K V D+F+ IGEP+SY
Sbjct: 124 ARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSY 183
Query: 274 RDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVDQLNLAQAN 333
RD L IL+GL EY+ FVT+I NRSD PSL++V SLL YE RL +++ LN QAN
Sbjct: 184 RDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN 243
Query: 334 LSSLSLQNSRRSNPKPNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPSR 393
P +P +N
Sbjct: 244 --------------------PRQPGYN--------------------------------- 303
Query: 394 LSSNKPQCQICGKFGHTALICHHRTNLAYQT---PPPQAYCPRFP-QPLPPLSLML 442
++ PQCQICGK GH AL +HRTNL Y P A+ P P Q P+S ML
Sbjct: 304 --NSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAML 303
BLAST of Lag0000600 vs. ExPASy TrEMBL
Match:
A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)
HSP 1 Score: 228.8 bits (582), Expect = 4.6e-56
Identity = 111/231 (48.05%), Postives = 161/231 (69.70%), Query Frame = 0
Query: 96 PPQQFSQNQIQNPIPYPNP--FTPNPYPTLP---QPLSVKLNDSNFLLWKNQLLNAVIAN 155
PP S + IP PNP +P P +P QPL+VKL+D N+++WK QLLN VIAN
Sbjct: 15 PPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74
Query: 156 GLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSA 215
GL+ +L GS PPR+LD QQ Q NP+F W+RYNR +M WIY+S++E +G+IV + SA
Sbjct: 75 GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134
Query: 216 AAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYR 275
+ IW +L+R Y + + A + L+T LQ IKK+ L+ Y+ + + + + ++IGEP++Y
Sbjct: 135 SQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYT 194
Query: 276 DHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVD 322
DHL + L GLG +YN FVT+IQ+++ PS+E+V SLLL+Y+ARLE+Q+A D
Sbjct: 195 DHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0000600 vs. ExPASy TrEMBL
Match:
A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 1.9e-54
Identity = 132/335 (39.40%), Postives = 190/335 (56.72%), Query Frame = 0
Query: 96 PPQQFSQNQIQNPIPYPNPFTPNP-----YPTLPQPLSVKLNDSNFLLWKNQLLNAVIAN 155
PP S + IP PNP N P++ QPL+VKL+D N+++WK QLLN VIAN
Sbjct: 15 PPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74
Query: 156 GLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKMGEIVSFDSA 215
GL+ +L GS PPR+LD QQ Q NP+F W+RYNR +M WIY+S++E +G+IV + SA
Sbjct: 75 GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134
Query: 216 AAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFSAIGEPISYR 275
+ IW +L+R Y + + A + L+T LQ IKK+ L+ Y+ + + + + ++IGEP++Y
Sbjct: 135 SQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYT 194
Query: 276 DHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRS-LLLAYEARLEKQNAVDQLNLAQAN 335
DHL + L GLG +YN FVT+IQ+++ PS+E+ S L + + + N
Sbjct: 195 DHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTSPTSLTRKPKFK-------------N 254
Query: 336 LSSLSLQNSRR-SNPKPNHSIPFRPPFNPQAFSPFSSQQHSASPSLLGKPQTQQLQKWPS 395
S+ S NS S+P+ + P ++P SP KP
Sbjct: 255 PSTNSFPNSNSYSHPRGQNR---NPSYSPNPSSP--------------KP---------- 304
Query: 396 RLSSNKPQCQICGKFGHTALICHHRTNLAYQTPPP 424
+P+CQIC K GHTA C+H TNL YQ PPP
Sbjct: 315 -----RPRCQICLKPGHTANKCYHHTNLNYQPPPP 304
BLAST of Lag0000600 vs. ExPASy TrEMBL
Match:
A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)
HSP 1 Score: 219.5 bits (558), Expect = 2.8e-53
Identity = 128/309 (41.42%), Postives = 187/309 (60.52%), Query Frame = 0
Query: 83 SPNFYNPRPQFFPPPQQFSQNQIQNPIPYPNPFTPNP-YPTLPQPLSVKLNDSNFLLWKN 142
+P+ NP Q P Q+QI P P P P P++ QP ++KL+ N+L+WKN
Sbjct: 10 NPSTGNPTIQMPPTNIPNVQDQIIGAQP---PLPPLPILPSMNQPFTIKLDADNYLIWKN 69
Query: 143 QLLNAVIANGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNRFIMCWIYSSLSEEKM 202
QLLN +IANGL+ ++ GS PPR+ D + N +++ W+R+NR IM WIY+SL++ M
Sbjct: 70 QLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVM 129
Query: 203 GEIVSFDSAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLSVSQYLSQIKEVADKFS 262
G+IV + SA IW +L + Y S + A+I L+ +LQ ++KD L+ +Y+ + K + + +
Sbjct: 130 GQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLA 189
Query: 263 AIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRSLLLAYEARLEKQNAVD 322
A+GEP+S +DHL ++ GL EYNAFVT+I R DN LE++ SLLL+YE RLE QNA
Sbjct: 190 AVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASA 249
Query: 323 QLNLAQANLSSLSLQNSRRSNPKPNHSIP---FRPPF--NPQAFSPFSSQQHSASPSLLG 382
QL+ QANL+ L N + +PN S P F F Q F + PS+LG
Sbjct: 250 QLSSLQANLAHL---NINKKPYRPNFSNPVGHFTQNFQNRTQQFQSHPPNSNQFQPSILG 309
Query: 383 KPQTQQLQK 386
KPQ + + +
Sbjct: 310 KPQGKHMNQ 312
BLAST of Lag0000600 vs. TAIR 10
Match:
AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 87.0 bits (214), Expect = 4.2e-17
Identity = 54/209 (25.84%), Postives = 108/209 (51.67%), Query Frame = 0
Query: 127 LSVKLNDSNFLLWKNQLLNAVIANGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYNR 186
+++ LN N+ +W+ ++ G+ G++ GS P T+ W+ +
Sbjct: 24 VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP------MTEK-----RWKERDG 83
Query: 187 FIMCWIYSSLSEEKMGEIVSFD-SAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNLS 246
+ WIY ++++ + I+ +A +W SL+ + AR + + +L+ D+LS
Sbjct: 84 LVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLS 143
Query: 247 VSQYLSQIKEVADKFSAIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVRS 306
V +Y ++K ++D + + PIS R + H+L+GL +Y+ + I+++S PS + RS
Sbjct: 144 VHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARS 203
Query: 307 LLLAYEARLEKQNAVDQLNLAQANLSSLS 335
+LL E+RL ++ + +L+ N SLS
Sbjct: 204 MLLMEESRLSNKS---KSSLSHTNHPSLS 218
BLAST of Lag0000600 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 75.5 bits (184), Expect = 1.3e-13
Identity = 39/192 (20.31%), Postives = 100/192 (52.08%), Query Frame = 0
Query: 126 PLSVKLNDSNFLLWKNQLLNAVIANGLQGYLHGSIAAPPRYLDDQQTQPNPDFLHWERYN 185
P+ + + +SN+ W+ L ++ + G++ G++ N + ++W++ +
Sbjct: 21 PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-----------LPTNANDVNWQKRD 80
Query: 186 RFIMCWIYSSLSEEK-MGEIVSFDSAAAIWNSLKRSYDSKTTARIMGLKTQLQKIKKDNL 245
+ +Y +L+ ++ G V+ ++ IW +K + + AR + L ++L+ ++
Sbjct: 81 GIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDM 140
Query: 246 SVSQYLSQIKEVADKFSAIGEPISYRDHLAHILDGLGSEYNAFVTTIQNRSDNPSLEDVR 305
V+ Y ++K++AD + P++ R+ + ++L+GL +++ + I++R PS +D
Sbjct: 141 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 200
Query: 306 SLLLAYEARLEK 317
++L E RL++
Sbjct: 201 TMLQEEEDRLKR 201
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 1.4e-115 | 65.43 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
RVW69807.1 | 3.0e-57 | 40.73 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
GFY85402.1 | 9.5e-56 | 48.05 | hypothetical protein Acr_04g0001400 [Actinidia rufa] | [more] |
GFZ12741.1 | 4.0e-54 | 39.40 | UBX domain-containing protein [Actinidia rufa] | [more] |
PON47862.1 | 5.8e-53 | 41.42 | hypothetical protein TorRG33x02_321990 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 1.8e-20 | 22.90 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 6.7e-116 | 65.43 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A438GC62 | 1.4e-57 | 40.73 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A0A7J0EGI5 | 4.6e-56 | 48.05 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1 | [more] |
A0A7J0GPN0 | 1.9e-54 | 39.40 | UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... | [more] |
A0A2P5BGF8 | 2.8e-53 | 41.42 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT5G48050.1 | 4.2e-17 | 25.84 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
AT1G34070.1 | 1.3e-13 | 20.31 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |