Lag0000569 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000569
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	50S ribosomal protein L1
Location	chr4: 10253232 .. 10253588 (-)
RNA-Seq Expression	Lag0000569
Synteny	Lag0000569

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGCCTTCCCTCCTTCCATTTCGCCTCTCAATCCGAACCCAACCCAGATCCCGGTTCTTCTCCTGATGAATTCTCTCGAAGAACCCCTCGCTCCGTTCCCTTTCAGCCCGTCTCCTACGCCATCAAGCCCAAGCCCCAATCCGCTCAAGACCTTGATTCCCAAGAATCCCCCGAATCTCCTCCTCCACGACAGCCGCCGCCGAGCTCCGAAGGTCGGAGGACGTGGACTCGCGAGGATATTCGTTGTATGAAGGATACTCCATCTATAGCTCCGGTGTCTTATCCGTCGCGTGTTGCTCTGCTTCCGGAAGATAGGGTTTCAGCTTTTGGCGAAGGAGAAGAGGGTGTGTAG

mRNA sequence

ATGAGGGGCCTTCCCTCCTTCCATTTCGCCTCTCAATCCGAACCCAACCCAGATCCCGGTTCTTCTCCTGATGAATTCTCTCGAAGAACCCCTCGCTCCGTTCCCTTTCAGCCCGTCTCCTACGCCATCAAGCCCAAGCCCCAATCCGCTCAAGACCTTGATTCCCAAGAATCCCCCGAATCTCCTCCTCCACGACAGCCGCCGCCGAGCTCCGAAGGTCGGAGGACGTGGACTCGCGAGGATATTCGTTGTATGAAGGATACTCCATCTATAGCTCCGGTGTCTTATCCGTCGCGTGTTGCTCTGCTTCCGGAAGATAGGGTTTCAGCTTTTGGCGAAGGAGAAGAGGGTGTGTAG

Coding sequence (CDS)

ATGAGGGGCCTTCCCTCCTTCCATTTCGCCTCTCAATCCGAACCCAACCCAGATCCCGGTTCTTCTCCTGATGAATTCTCTCGAAGAACCCCTCGCTCCGTTCCCTTTCAGCCCGTCTCCTACGCCATCAAGCCCAAGCCCCAATCCGCTCAAGACCTTGATTCCCAAGAATCCCCCGAATCTCCTCCTCCACGACAGCCGCCGCCGAGCTCCGAAGGTCGGAGGACGTGGACTCGCGAGGATATTCGTTGTATGAAGGATACTCCATCTATAGCTCCGGTGTCTTATCCGTCGCGTGTTGCTCTGCTTCCGGAAGATAGGGTTTCAGCTTTTGGCGAAGGAGAAGAGGGTGTGTAG

Protein sequence

MRGLPSFHFASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV

Homology

[Close]

BLAST of Lag0000569 vs. NCBI nr
Match: XP_022948447.1 (uncharacterized protein LOC111452129 [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 5.7e-37
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 10  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQP 69
           +SQSE +PDP S P+E S +  TPRS P QPVSYAIKPKPQSAQDLDS ES +SPPPR+P
Sbjct: 36  SSQSESSPDPDSPPNESSPKTSTPRSAPIQPVSYAIKPKPQSAQDLDSPESTQSPPPRRP 95

Query: 70  PPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV 119
           PPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDRVSA GEGEE V
Sbjct: 96  PPSPEGRRSWTREDIRYMKDTPSIAPVSYPSRVAPLPEDRVSAAGEGEESV 146

[Close]

BLAST of Lag0000569 vs. NCBI nr
Match: XP_023524712.1 (uncharacterized protein LOC111788572 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 4.8e-36
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 10  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQP 69
           +SQSE +PDP S P+E S +  T RS P QPVSYAIKPKPQSAQDLDS ES +SPPPR+P
Sbjct: 36  SSQSESSPDPDSPPNESSPKTSTSRSAPIQPVSYAIKPKPQSAQDLDSPESTQSPPPRRP 95

Query: 70  PPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV 119
           PPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDRVSA GEGEE V
Sbjct: 96  PPSPEGRRSWTREDIRYMKDTPSIAPVSYPSRVAPLPEDRVSAAGEGEESV 146

[Close]

BLAST of Lag0000569 vs. NCBI nr
Match: XP_022980111.1 (uncharacterized protein LOC111479599 [Cucurbita maxima] >XP_022980112.1 uncharacterized protein LOC111479599 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 89/110 (80.91%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 10  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPP 69
           +SQSE NPDP S P+E S RTPRSVP QPVSYAIKPKPQS QD DS ESP+ P  PR+PP
Sbjct: 36  SSQSESNPDPDSPPNE-SSRTPRSVPIQPVSYAIKPKPQSDQDRDSPESPQPPSAPRRPP 95

Query: 70  PSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV 119
           PSSEGR TWTREDIR MKDTPSIAPVSYPSRVA LPEDRVSA G GEEGV
Sbjct: 96  PSSEGRTTWTREDIRYMKDTPSIAPVSYPSRVAPLPEDRVSASGGGEEGV 144

[Close]

BLAST of Lag0000569 vs. NCBI nr
Match: KAG6606834.1 (hypothetical protein SDJN03_00176, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036539.1 rplA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 4.1e-35
Identity = 86/111 (77.48%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 10  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQP 69
           +SQSE +PDP S P+E S +  T RS P QPVSYAIK KPQSAQDLDS ES +SPPPR+P
Sbjct: 36  SSQSESSPDPDSPPNESSPKTSTSRSAPIQPVSYAIKSKPQSAQDLDSPESTQSPPPRRP 95

Query: 70  PPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV 119
           PPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDRVSA GEGEE V
Sbjct: 96  PPSPEGRRSWTREDIRYMKDTPSIAPVSYPSRVAPLPEDRVSAAGEGEESV 146

[Close]

BLAST of Lag0000569 vs. NCBI nr
Match: KAG6581968.1 (hypothetical protein SDJN03_21970, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018387.1 rplA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 10  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPP 69
           +SQSE NPDP S P+E S RTPRS P QPVSYAIKPKPQS QD DS ESP+ P  PR+PP
Sbjct: 36  SSQSESNPDPDSPPNE-SSRTPRSAPIQPVSYAIKPKPQSDQDHDSPESPQPPSAPRRPP 95

Query: 70  PSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSAFGEGEEGV 119
           PS EGRRTWTREDIR MKDTP+IAPVSYPSRVA LPEDRVSA G GEEGV
Sbjct: 96  PSPEGRRTWTREDIRYMKDTPTIAPVSYPSRVAPLPEDRVSASGGGEEGV 144

The following BLAST results are available for this feature:

BLAST of Lag0000569 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948447.1	5.7e-37	79.28	uncharacterized protein LOC111452129 [Cucurbita moschata]	[more]
XP_023524712.1	4.8e-36	78.38	uncharacterized protein LOC111788572 [Cucurbita pepo subsp. pepo]	[more]
XP_022980111.1	1.1e-35	80.91	uncharacterized protein LOC111479599 [Cucurbita maxima] >XP_022980112.1 uncharac...	[more]
KAG6606834.1	4.1e-35	77.48	hypothetical protein SDJN03_00176, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6581968.1	6.9e-35	79.09	hypothetical protein SDJN03_21970, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0000569 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000569.1	Lag0000569.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding