Lag0000536 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000536
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Locationchr4: 9599969 .. 9600628 (+)
RNA-Seq ExpressionLag0000536
SyntenyLag0000536
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAAGTGCCACGATGTCGCCGTCGGAAGCAAAAAGTTGGTCGTGTTAAGGTAGTCTGAACTGATACTCCCTCGCCGTCGACCACGGATTCTGAGAGAGAGAATGTAGAGATAGAGGAACAGGAGAAAAAATAGGTCGAAGACAAAGCAAGAGAGGAAGTAGAGAAAAAGGCTGAAGAGGAAACTTTGCTCAAACAAAGGGAAGACAAGGGAAAAGATATTGTTGAAGCGTCGTCGGATCTAGAAGTTAGTGAAACAGAGGAGCCAAGGTTACCGTATAACCGCTTCATCAACAATCTTGCCAGAGCAAAGTATGCTGAGATGCTGAGAAGAGACTTTTTGTTTGAACAAGGATTTGGCGATGATTTGCCACGGTTCTTAAGGATTGGAATAGGGAACCATGGCTGGAGTCAATTCTGTGCAAAGCCGGACCCGGTCAACTCCAACATTGTTCGAGAGTTTTATGCCAATATTGATGATCAAGAAGAATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCAACCTTCAGGACTCCCCGCACGTATGCTTCAATGAGATGGTGGTAGCGCCATCAAATGATCAGTTAAATGCGACTGTCCGAGAGGTTGGCATCGAGGGAGCCTAG

mRNA sequence

ATGCCGAAAGTGCCACGATGTCGCCGTCGGAAGCAAAAAGTTGGTCGTGTTAAGGTCGAAGACAAAGCAAGAGAGGAAGTAGAGAAAAAGGCTGAAGAGGAAACTTTGCTCAAACAAAGGGAAGACAAGGGAAAAGATATTGTTGAAGCGTCGTCGGATCTAGAAGTTAGTGAAACAGAGGAGCCAAGGTTACCGTATAACCGCTTCATCAACAATCTTGCCAGAGCAAAGTATGCTGAGATGCTGAGAAGAGACTTTTTGTTTGAACAAGGATTTGGCGATGATTTGCCACGGTTCTTAAGGATTGGAATAGGGAACCATGGCTGGAGTCAATTCTGTGCAAAGCCGGACCCGGTCAACTCCAACATTGTTCGAGAGTTTTATGCCAATATTGATGATCAAGAAGAATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCAACCTTCAGGACTCCCCGCACGTATGCTTCAATGAGATGGTGGTAGCGCCATCAAATGATCAGTTAAATGCGACTGTCCGAGAGGTTGGCATCGAGGGAGCCTAG

Coding sequence (CDS)

ATGCCGAAAGTGCCACGATGTCGCCGTCGGAAGCAAAAAGTTGGTCGTGTTAAGGTCGAAGACAAAGCAAGAGAGGAAGTAGAGAAAAAGGCTGAAGAGGAAACTTTGCTCAAACAAAGGGAAGACAAGGGAAAAGATATTGTTGAAGCGTCGTCGGATCTAGAAGTTAGTGAAACAGAGGAGCCAAGGTTACCGTATAACCGCTTCATCAACAATCTTGCCAGAGCAAAGTATGCTGAGATGCTGAGAAGAGACTTTTTGTTTGAACAAGGATTTGGCGATGATTTGCCACGGTTCTTAAGGATTGGAATAGGGAACCATGGCTGGAGTCAATTCTGTGCAAAGCCGGACCCGGTCAACTCCAACATTGTTCGAGAGTTTTATGCCAATATTGATGATCAAGAAGAATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCAACCTTCAGGACTCCCCGCACGTATGCTTCAATGAGATGGTGGTAGCGCCATCAAATGATCAGTTAAATGCGACTGTCCGAGAGGTTGGCATCGAGGGAGCCTAG

Protein sequence

MPKVPRCRRRKQKVGRVKVEDKAREEVEKKAEEETLLKQREDKGKDIVEASSDLEVSETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA
Homology
BLAST of Lag0000536 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 47/131 (35.88%), Postives = 63/131 (48.09%), Query Frame = 0

Query: 68  RFINNLARAKYAEMLRRDFL-FEQGFGDD------LPRFLRIGIGNHGWSQFCAKPDPVN 127
           +F +  A A+Y E ++   L  E+GF  +       P F+   I  H W  FCA  +   
Sbjct: 15  KFDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPI 74

Query: 128 SNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQD--SPHVCFNEMVVAPSNDQ 187
             +VREFYAN+ D EE    V+GV V WS  AIN+LF L D    H  F E V       
Sbjct: 75  VPLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGLGDPVDEHSAFVEDVTERELLI 134

Query: 188 LNATVREVGIE 190
           +  T+   G+E
Sbjct: 135 VLETIAAAGVE 145

BLAST of Lag0000536 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 68  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPV 127
           +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 128 NSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQD 162
              +VREFYAN+ D EE    VRGV V WS  AIN++F L D
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD 124

BLAST of Lag0000536 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 47/134 (35.07%), Postives = 59/134 (44.03%), Query Frame = 0

Query: 58  ETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPD 117
           ETEE    Y   I      K      + FL           F+   I  H W QFCA P+
Sbjct: 49  ETEEAETRYEENIQ-----KQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPE 108

Query: 118 PVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVCFNEMVVAPSND 177
                +VREFYAN+ D EE    VRGV V W+  AIN++F L D P    +E V   +  
Sbjct: 109 DPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGLGD-PVDEHSEFVADITEQ 168

Query: 178 QLNATVREVGIEGA 192
           +L   +  V   GA
Sbjct: 169 ELIMVLETVAAAGA 176

BLAST of Lag0000536 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-08
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 0

Query: 74  ARAKYAEMLR-RDFLFEQGF-GD-----DLPRFLRIGIGNHGWSQFCAKPDPVNSNIVRE 133
           A  +Y E ++ R    E+GF GD     + P F+   I  H W  FCA P+ + + +VRE
Sbjct: 21  AETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVRE 80

Query: 134 FYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVCFNEMVVAPSNDQLNATVREV 192
           FYAN+ + ++    VRGV V  S  AIN+++ L D P    +E V A +  +L   +  V
Sbjct: 81  FYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETV 140

BLAST of Lag0000536 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 47/132 (35.61%), Postives = 63/132 (47.73%), Query Frame = 0

Query: 68  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPV 127
           +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 128 NSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVCFNEMVVAPSNDQL 187
              +VREFYAN+ D  E    VRGV V WS  AIN++F L D P    +E +   +   L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 188 NATVREVGIEGA 192
              +  V + GA
Sbjct: 135 ITVLETVAVAGA 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON90635.11.4e-0835.88hypothetical protein TorRG33x02_134920 [Trema orientale][more]
PON46472.11.8e-0841.18hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON85987.11.8e-0835.07hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
PON42276.12.4e-0836.00hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON35554.13.1e-0835.61hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000536.1Lag0000536.1mRNA