Lag0000282 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000282
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag-pro-like protein
Location	chr4: 2892636 .. 2893082 (+)
RNA-Seq Expression	Lag0000282
Synteny	Lag0000282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGGGCGAAAGAAATGGCAACTAAAGTAGTGGTAAATGGAGGATATCAGTTGAATAAAAACTTAGAAAGGTTGCTGAGCATACGAAGCAATGTTGGGACATTTGGGTTGGGCTATAAGCCTACCAAATGTGATAAAATTAGACTTCAGGAAGAAAAGAAAGAAAAACGATTGGCCAGGTTAGAAGGAAAGGGATCCACTCCAAGTCTCAAAAGTTTACCATCATTGTATGATAACTTCAAAAGTGCTGGTTTGAGCTTCTCAACGTTGGACTCTTACTCAACAGATCACTTATTAATGGAAGTGCGAAACTTGTCGATCGCAACAATTGTTAATGAGCTACCACACGAAGAGGACATAATCTATGCATGTTCACCTGATTTCGAGCTTAACAATTGGGATGGTGTAGATCTACCTATAATTTCACAAGATTTGCAAGAGTAA

mRNA sequence

ATGTTTAGGGCGAAAGAAATGGCAACTAAAGTAGTGGTAAATGGAGGATATCAGTTGAATAAAAACTTAGAAAGGTTGCTGAGCATACGAAGCAATGTTGGGACATTTGGGTTGGGCTATAAGCCTACCAAATGTGATAAAATTAGACTTCAGGAAGAAAAGAAAGAAAAACGATTGGCCAGGTTAGAAGGAAAGGGATCCACTCCAAGTCTCAAAAGTTTACCATCATTGTATGATAACTTCAAAAGTGCTGGTTTGAGCTTCTCAACGTTGGACTCTTACTCAACAGATCACTTATTAATGGAAGTGCGAAACTTGTCGATCGCAACAATTGTTAATGAGCTACCACACGAAGAGGACATAATCTATGCATGTTCACCTGATTTCGAGCTTAACAATTGGGATGGTGTAGATCTACCTATAATTTCACAAGATTTGCAAGAGTAA

Coding sequence (CDS)

ATGTTTAGGGCGAAAGAAATGGCAACTAAAGTAGTGGTAAATGGAGGATATCAGTTGAATAAAAACTTAGAAAGGTTGCTGAGCATACGAAGCAATGTTGGGACATTTGGGTTGGGCTATAAGCCTACCAAATGTGATAAAATTAGACTTCAGGAAGAAAAGAAAGAAAAACGATTGGCCAGGTTAGAAGGAAAGGGATCCACTCCAAGTCTCAAAAGTTTACCATCATTGTATGATAACTTCAAAAGTGCTGGTTTGAGCTTCTCAACGTTGGACTCTTACTCAACAGATCACTTATTAATGGAAGTGCGAAACTTGTCGATCGCAACAATTGTTAATGAGCTACCACACGAAGAGGACATAATCTATGCATGTTCACCTGATTTCGAGCTTAACAATTGGGATGGTGTAGATCTACCTATAATTTCACAAGATTTGCAAGAGTAA

Protein sequence

MFRAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARLEGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDIIYACSPDFELNNWDGVDLPIISQDLQE

Homology

[Close]

BLAST of Lag0000282 vs. NCBI nr
Match: KAA0036947.1 (uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 8.4e-38
Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 3   RAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARL 62
           + + M T+++  GGY LNKNLE LL I SN G FGLGYKP+  DKIRLQEEKK+KRLA+L
Sbjct: 809 KVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLAKL 868

Query: 63  EGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDII 122
           E +   PS+K +P LYD FKSAG+S+S+ +S   D LL ++ +LS+A +  E   E + +
Sbjct: 869 EMREFDPSVKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLSVAVVAQEASFEGNTV 928

Query: 123 YACSPDFELNNWDGVDLPIISQDLQE 149
           YAC PDFELNNWD VDLP  S+D QE
Sbjct: 929 YACPPDFELNNWDSVDLPTFSRDFQE 954

[Close]

BLAST of Lag0000282 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 81/146 (55.48%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 3    RAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARL 62
            + + M T+++  GGY LNKNLE LL I SN G FGLGYKP+  DKIRLQE+KK+KRLA+L
Sbjct: 947  KVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDKIRLQEKKKKKRLAKL 1006

Query: 63   EGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDII 122
            E +   PS+K +P LYD FKSAG+S+S+ +S   D LL ++ +LS+A +  E   E + +
Sbjct: 1007 EMREFDPSIKLIPELYDIFKSAGISYSSHNSDLKDDLLTKMGSLSVAAVAQEASFEGNTV 1066

Query: 123  YACSPDFELNNWDGVDLPIISQDLQE 149
            YAC PDFELNNWD VDLP  S+D Q+
Sbjct: 1067 YACPPDFELNNWDSVDLPTFSRDFQD 1092

[Close]

BLAST of Lag0000282 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 80/146 (54.79%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 3    RAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARL 62
            + + M T+++  GGY LNKNLE LL I SN G FGLGYKP+  DKIRLQE+KK+KRL +L
Sbjct: 1364 KVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDKIRLQEKKKKKRLVKL 1423

Query: 63   EGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDII 122
            E +   PS+K +P LYD FKSAG+S+S+ +S   D LL ++ +LS+A +  E   E + +
Sbjct: 1424 EMREFDPSIKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLSVAAVAQEASFEGNTV 1483

Query: 123  YACSPDFELNNWDGVDLPIISQDLQE 149
            YAC PDFELNNWD VDLP  S+D Q+
Sbjct: 1484 YACPPDFELNNWDSVDLPTFSRDFQD 1509

[Close]

BLAST of Lag0000282 vs. NCBI nr
Match: KAA0055607.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK24460.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-36
Identity = 80/146 (54.79%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 3   RAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARL 62
           + + M T+++  GGY LN+NLE LL   SN G FGLGYKP+  DKIRLQEEKK+KRLA+L
Sbjct: 564 KVEVMTTRIMGGGGYSLNQNLETLLKTPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLAKL 623

Query: 63  EGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDII 122
           E +   PS+K +P LYD FKSAG+S+S+ +S   D LL ++ +LS+A +  +   E + +
Sbjct: 624 EMREFDPSIKFIPELYDIFKSAGISYSSHNSDLKDDLLTKMESLSVAAVAQQTSFEGNTV 683

Query: 123 YACSPDFELNNWDGVDLPIISQDLQE 149
           YAC PDFELNNWD VDLP  S+D QE
Sbjct: 684 YACPPDFELNNWDSVDLPTFSRDFQE 709

[Close]

BLAST of Lag0000282 vs. NCBI nr
Match: KAA0036957.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.5e-36
Identity = 80/146 (54.79%), Postives = 104/146 (71.23%), Query Frame = 0


Query: 3    RAKEMATKVVVNGGYQLNKNLERLLSIRSNVGTFGLGYKPTKCDKIRLQEEKKEKRLARL 62
            + + M T+++  GGY LNKNLE LL I SN G FGLGYKP+  DKIRLQE KK+KRLA+L
Sbjct: 907  KVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDKIRLQEGKKKKRLAKL 966

Query: 63   EGKGSTPSLKSLPSLYDNFKSAGLSFSTLDSYSTDHLLMEVRNLSIATIVNELPHEEDII 122
            E +   PS+K +P LYD FKSAG+S+S+ +S   D LL ++ +LS+A +  E   E + +
Sbjct: 967  EMREFDPSIKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLSVAAVAQEASFEGNTV 1026

Query: 123  YACSPDFELNNWDGVDLPIISQDLQE 149
            YAC PDFELNNWD VDLP  S+D  +
Sbjct: 1027 YACPPDFELNNWDSVDLPTFSRDFHD 1052

The following BLAST results are available for this feature:

BLAST of Lag0000282 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036947.1	8.4e-38	56.85	uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]	[more]
TYK21788.1	1.2e-36	55.48	uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]	[more]
KAA0036933.1	1.2e-36	54.79	uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]	[more]
KAA0055607.1	2.7e-36	54.79	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK24460.1 Gag-pro-like protein...	[more]
KAA0036957.1	3.5e-36	54.79	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]

BLAST of Lag0000282 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000282.1	Lag0000282.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid