Lag0000261 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000261
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Locationchr4: 2473714 .. 2474359 (-)
RNA-Seq ExpressionLag0000261
SyntenyLag0000261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTGCAGGAGGCGCGGTGGAGGTGATCATGTCGGAGGTGCCTAAACGTCGCCGCATTAAACGAAAAGTCGGCCGTGTTCAGGTAGTCCGAACTGATACCCCCTCGCCTCCAACTACTAACACTGAAAGAGAAAATGCAGAGAAAGAATAACGTGAGAAGAAGAAGGCTGAGGAAAGAGTAAGAGAAGAAACAGAGAAAAAGTTGAGGAAGAGCGGTTACTCAAGCGAAGGGCGGAAAAGGCAAAAGTGTTGTTGAAGCATCGGAAAAACCTGATGAGGTAGATGAGCCACAGTTGCCATATGATCGCTTCGTCAACAATTCTGCCAGAGCAAAATATGTTGAGCTGCTGAAAAGAGATTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCTGCATTTTCTGAGGACCGGCATTACAGACCACGGCTGGGAATTGTTTTGTGCAAAGCCTGAGTCTATAAACGCGCAGGTGGTGTGCGAATTTTATGCTAATATTAACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTCGACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCAAATTTCCCCCACGCAGCGTATAATGAGATGGCTGTGGCGTCATCCAATGAGCAACTGA

mRNA sequence

ATGAGCCGTGCAGGAGGCGCGGTGGAGGTGATCATGTCGGAGGTGCCTAAACGTCGCCGCATTAAACGAAAAGTCGGCCGTGTTCAGGGCGGAAAAGGCAAAAGTGTTGTTGAAGCATCGGAAAAACCTGATGAGGTAGATGAGCCACAGTTGCCATATGATCGCTTCGTCAACAATTCTGCCAGAGCAAAATATGTTGAGCTGCTGAAAAGAGATTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCTGCATTTTCTGAGGACCGGCATTACAGACCACGGCTGGGAATTGTTTTGTGCAAAGCCTGAGTCTATAAACGCGCAGGTGGTGTGCGAATTTTATGCTAATATTAACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTCGACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCAAATTTCCCCCACGCAGCGTATAATGAGATGGCTGTGGCGTCATCCAATGAGCAACTGA

Coding sequence (CDS)

ATGAGCCGTGCAGGAGGCGCGGTGGAGGTGATCATGTCGGAGGTGCCTAAACGTCGCCGCATTAAACGAAAAGTCGGCCGTGTTCAGGGCGGAAAAGGCAAAAGTGTTGTTGAAGCATCGGAAAAACCTGATGAGGTAGATGAGCCACAGTTGCCATATGATCGCTTCGTCAACAATTCTGCCAGAGCAAAATATGTTGAGCTGCTGAAAAGAGATTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCTGCATTTTCTGAGGACCGGCATTACAGACCACGGCTGGGAATTGTTTTGTGCAAAGCCTGAGTCTATAAACGCGCAGGTGGTGTGCGAATTTTATGCTAATATTAACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTCGACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCAAATTTCCCCCACGCAGCGTATAATGAGATGGCTGTGGCGTCATCCAATGAGCAACTGA

Protein sequence

MSRAGGAVEVIMSEVPKRRRIKRKVGRVQGGKGKSVVEASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGFSGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQISPTQRIMRWLWRHPMSN
Homology
BLAST of Lag0000261 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-09
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 58  NNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQV 117
           + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE + A +
Sbjct: 18  SEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPL 77

Query: 118 VCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL 147
           V EFYAN+   D   V VRGV+V  S  AIN +Y L
Sbjct: 78  VREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGL 113

BLAST of Lag0000261 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-08
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 55  RFVNNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESIN 114
           +F + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 115 AQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL 147
             +V EFYAN+   D   V VRGV+V  S  AIN +Y L
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGL 113

BLAST of Lag0000261 vs. NCBI nr
Match: PKC51568.1 (hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 39  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITD 98
           +++ P   D   +    F ++ AR ++  L+ +  + ERGF      GDLL      I +
Sbjct: 13  STQAPTSSDSSSMGEVEFTSDGARTEFQRLMNKSIVKERGFLPTAEDGDLLSM----IQE 72

Query: 99  HGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVKVDWSPSAI 141
            GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++VD+S  AI
Sbjct: 73  RGWESFCEAPEAVPLAIIREFYANAKENRDGF-TVVRGIRVDYSAEAI 115

BLAST of Lag0000261 vs. NCBI nr
Match: KZM94204.1 (hypothetical protein DCAR_017447 [Daucus carota subsp. sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 0

Query: 39  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITD 98
           +++ P   D   +    F ++ AR ++  L+ +  + ERGF      G+LL+     I +
Sbjct: 13  STQAPTSSDSSSMGEVEFTSDGARTEFQRLMNKSIVKERGFLPTAEDGELLNM----IQE 72

Query: 99  HGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVKVDWSPSAI 141
            GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++VD+S  AI
Sbjct: 73  RGWESFCEAPEAVPLAIIREFYANAKENRDGF-TVVRGIRVDYSAEAI 115

BLAST of Lag0000261 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-08
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 56  FVNNSARAKYVELLKRDFLFERGF------SGDLLHFLRTGITDHGWELFCAKPESINAQ 115
           FV+ +A+  Y  +  R   FE GF      + +L   +   +T H W+ F   P  +NA 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 116 VVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQIS 150
           +V EFY+NI + +   V+VRG+ + ++P+AIN  + LQ++
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQVA 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON42276.13.1e-0941.67hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON65868.11.6e-0840.40hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PKC51568.12.7e-0835.19hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis][more]
KZM94204.14.5e-0834.26hypothetical protein DCAR_017447 [Daucus carota subsp. sativus][more]
KAE8695166.15.9e-0833.00hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000261.1Lag0000261.1mRNA