IVF0026913 (gene) Melon (IVF77) v1

Overview
NameIVF0026913
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr12: 15118791 .. 15125581 (+)
RNA-Seq ExpressionIVF0026913
SyntenyIVF0026913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGAAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCACATTGCTGAATGACCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCCTGAGCTGACATTTATGGATAGGTGTCCCTTAATGCCTATACTTATGCGTAACGTCAATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTCTATTTGTATTGGTGGTTTTTTATACTTGGACTATATGTTCATTAATTTACTTATTTTGTCTTATTATCTAACAAAATTCTCTTTCTCTTCAAGCTTGGTTTGTATTTTCATTTCGCTTTTCAATGTAATGGTTTGATATTGTTGTATTATCGTATTAATGTACTGTTTTCGTTCAAGTTCTTTTTTACAATATTTCTAAATTGCGTACATGTGAAAATAATTTGTTTGAATAATTTAAATACGATTTACGAATTAATTTTGCACGACATAACATAAGAGAAGAAACAAAATTATTAAATGGGACTCAATAGAAACAAAATTATTAAATGGGACTCAATATAACTATTTTAGAAAATAAATATTTTGTTACTCACAGGTACGTAAAAAAAATTTTCAAAAGTATATACAGAAATATGTTTGGGTTATTCTAGTTACATAATTGAATATTGATCGTTTAAAAAAAATATTAAATTATAAATTTTGTATTCTTATATTAACATTCTTTATTTAAAAAAATATCATAAATCCAATTAACGTAATATTTGCCCCAAACAAGTTTTATAATAATATTACACTCATAACTCTTCCTCCAAACACAATTTATAATAATACTACAATAATAATCCTTCCCCCAAACACATATTATAATAATACTACAATAATAATCCTTTCCCCAAACACATATTATTATAACACTACTATAATAATCCCTTTCCCAAACACATACTATCATAACACTACCTTTCATATTTCTTCCCCCAAACACATATTATAATAACACTACCAATAATAACACTTCCCCCCAAACACATATTATCATAACACTAGGATTATCATAATCCTAGGATTATCATAATCTTTTTCCCCCATAACTCTTTCCCTCCCCAAGGGTGGGTGTGTTTGGGCCTCGAGTATGGGGGAAAAGGAAAAGAAATTTGGGCCAAACCTTGTTTGGCCTATATATTATGCCAAAAGGGGATTAGGAAAACCCTAATCCCCATATCCCCTATTTTATCCTACACTTCAGCTGTCGACTGCCTCTTTTAACCCTACTCTTTTCCGGCCGATTTCCTTCGATTTCTCTGTCTTTTCCGTTCCCTTTTCGTCGGATTATCTTCAATTATCTCCATTTTACCTATCTCTTCTCCCTTCCCCTTCAAGTTGATTTACATTTTGTTCGTATTTATACTATTTCACCGATCTGTTCGTGACCTCCGAAACGCCTTTGATCCTCTCATCCTCTCCCCGAAACGATCTGTTCGTGTTCCATTATTTTTCCCTAATCTCCCCGAAACGCCTCTCACCCTCTCTATTTTGTGTTTCGTTGATCGGTTGCGACGAACGTCCGTGACCTCCGAAAAGCTTCTCATCCTTTCTATTTTCCGTTTCGTTGATCGGTTGCCACGAAAGTGCGTGACCTCCGAAACGCTTCTCATCCTCTCTCCATTTTTTCATACCATTTCGTCCATCGAACAACCCTTGCCGCTCCCCACTCTTGCCGATCGTATAACCAGTTTACTGCACTTTTTTTGTTTAACCGAACGGGTATGTTGTCATTGATTCTACACTAAATCGAGGAAAGGAACTCGAGTAGGGGCATGGGAGCATGGCAGGGGTTATCGGTGTGCACTAAAGGTATGACGTGCCTATGATGAGGATTGTAGTGGTGGTTCTGATTTGGTCTTTTCATGTTTGTTCTTATTTTCGGTCGATTATGCATTCCTTTGTTCTTCATATTGCCAGTGATGAGTTCAATTATATATTACTGATTCTGTTCATTTTGTTTTAAATCTTCGTTTGTCAACTTCGTTAACCATCATCCGACTTTTGTTGTTGATGTTCATATGTGATCAATTGTGGATTTCTTTGTTGTTGATCTTTGTGATCAATTGTGTTCTTGATGTTCAAATGTGATCAATTGTGGAACATCCCTCTTTGTTCTTCATATTCGTTTCTGAACTTGTTTAACGATCATGAATCTCTGTTCTTGACATCTATATGTGATTGAACTTTCTTTTTCCTTCCTCTGTCATCATTTATGTTGGAACTCTGGATTTCTTTTACAACTGGTTAAATTTCATTTGTTCCATTCAATTTCAATTTTGCTGTCTATGTACTTGTGTTGAAAAAAATGTCTGCCTACTGTGTATATATATTTGGATGTTCTCACAGCATTACATGCCCCATTCTCTTCCCATTTTCTTATACTTGCAGTCCCCTTTGATATGTTCATAACATTTGTTTGCTCTAATTGCTTTTCATTACATTTGCCACTTTAGCCACTATTTTCACTACTTTACAATTGAATAATTTTTAATCTAACTTTTAAAACCACACTTGTTTGTTTTTTACAATTGCCACTTTTGCTATGTTCTTCAAATTTCCCCTACTTAATTTTTTTTTACAAAACAAATATGGTTGTTGTAGTTTGATTTCTTCCTATGGCCTTTTTTTGGTTTTGTAGTCTGTTTTCTCCCTATGGTTTTTTTCCCTTTGCGCACTGTGTTCTCACACTCCCGACGGTTTTATGAACATGTTGATCTCTATTTTATGTCTCTCGTTGGTTGCTTGTGTTTTACATGTGATGTTATCAAGTCCACCGCACTAAATTGTACCGCAAATGCGTTCTCTTGAACGTCTTTGATGGTATTTATTAACTCTGAGGCAACTTCCTTTCCCATACATTATGTACTAACACATTTATTTTTTGGTACGGTCCCATGGATTTGTAAGCTTTCGTTTCTTTTTAAGGTATGTTTCATATGCGTTTTTTCGTATATTTTTACAATACATAATCTTTACGGCCACGCATATGTAATGACAATGTCGTTTGTTGTGTAAATCTTCAGGTTGTCGTACTTAAAGAATTCGTAATTGAGGTACAACGGCTTTAAACCTCATTCATTTATGAAGTTTATGTATATGTCGTGTACTTAATTATTTTTGTAATGAATTCTTTTCTTTCTTTATTATTCATTTCTGTTTCTTGTATCAAACGCTTCGCATTATATGTTATAAATCGTATTTTTCTTAGTATGTTAAGTGATAGTATTCTTTCCATTCTATATTTGCCACTGCCCGTATGTATGTTAGCTACTGTTTTGAAATTAAGAAAAGTTGCCATTGCCCGTATGTATGAATTTTTCTTAGTCCATGAATTTGATATTCATTACATCAAACTTAATTAACATTATTATTTAGAAAAGTTGATTGTATATGTAGATGAATAATAATAACACGGTGAGCTATAGATAATAAAATTGACATTATTATTTCAACAATATTATTGAGATATTGATGTATGTAATTTGGGTGGTATTAAGTAATGTTAAATGGAAATAGAATTCAAAATAATATTTTTTAACTAACTTTATTTTATGTAAGATGCAGTGGGTTAGAAAATTACTAGCTTCCCTAGTTAATTTACAAACATTTTACTTTACAAAAAATTAATTTAGAAACTCTTTCAATTACTTTAGAACAAATTAATGGCAAATATATTTTACAAACTCCTCCAAAAATTTTATAAACAAATTCCATTTATAAAGCAATTTTACAAACTCTCTCAATTAATTTATAAAATATTTGTATTTCTAAACATACTTTTTAAACTCCCATAATTAATGTAAGAAAAATGTATATTTATAAACATAATTTTACAAACTATTCCAATTAATTTGAAATTAAATAAATTTTCAAAACATATTTTCGCATTTGTGTCGCTTCTAAATGCGTTTCTAATGGACGAACATGTAATTAGTTTAAAAAAATGGGTTTCCAAATATACGTAATGAAGTTTGCACGAACGTATTTTCAAAAAAGTAGTACAAGTCAATTACTTAACTTGTAAACATATTAACTTAGTTTACCTTTGAAGATATTTCCAAAATTTCAAAACCTAGATTGGTAGTAGGTGATTACGTTAACAACATTCGAAATTAACACGTTCTTAGGATTATTTTCCAACAGGGTGTGAATCTATAATTTATAATGGATGAACATGAGTTGGCGTCTATTGTAAATGTACTCATAGCATCCTAACGACAGTTGTTACTAATGTTGGAGCTCTTGAAGAACGATACGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAGTTAGCTTACTTTCGCATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTTTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCAACATTCTTGCGCACGACGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTTGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCCGTCATTCGACTTCATCAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGATTGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTAAAAAATTTTGAGTTATGCGTTGTAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTCCAGTAAGTGATCGGGCTAGATATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGTGTGTGTGACACGAAAGGAGATTTCATTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCAGACTCACGTATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGTAAGTAACAACGGCATTGTACCTATGAATGCAATTTTGCAAGTAACAGCTGCGACATTTTAATCGTGCATTGTGGTCACAGGGTATTACTACCTGGTTGATGTCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCGAAAAAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGAGCGATACTGTGGGGAAAGTCATACTACCATGTAGGAGTTCAATGTCGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGGTATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCCGCCGATGACATACATTACATACAGACGTCGAATGAGTGGAGTCAATGGAGGGACGACCTTGTAGAAGAAATGTTTACTGAATGGGAGTTTCGTAACCAATAGAAAAATTAAACGTTCCTCGTTCATTTTCATACTTAAGTAGTGATTGCAATAGGTTCTATGTTGTCATAGTTTTGGAATATGATTATTTTGAATGTATTGGTGACTGAAGTAACTTACTGCCAAACTGTTTTTCAGTAGGAGTTCACTGTACTATGAAACTAATCGTATGTATCTAATCTAATCATACGGAACTTAATGAAACTAATATGTTTGCGTTTGACTTCTAGCATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAAGCCTCGTGGAGTTGGTCAACGCTGGTGGGTGGAGGTCTGACAATGGAACCTTTCACCCCGGGTACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGCCGAATCAAATTGTTGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAAATTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCTGAGAAAGAAGTCTTTGACGATTGAGTAAAGGTGCATTAGTAGTCATTTGAACACTTGTACTATTATTTCAATACATGGACTAATAATTTATTATTGCACTTATACAGAGTCATCCGGCAGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCTTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCTGAGATTTTTGCAGACATTGGGTCAAACGATCCTGCTGGGTATGACGCATTTGTTGCTGATGCTGCGCCAGATACGAACTTCTCCCCAATGTACAGTCCGAGATTGAACATGTCACCTGATGATTTGATGGAAACCAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTCAAGTGGGTCTAGGCGGAAACATACAGGACATGCCACAGATAGTGGGGACATAGTTTGTACTGCCATCGTGTACGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCAACCCAAACATGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGA

mRNA sequence

ATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGAAAACGTGGAGGACAGGCCGCAGACAGTGGGGACTTTGTACTGCCATCGTGTACGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCAACCCAAACATGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGA

Coding sequence (CDS)

ATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGAAAACGTGGAGGACAGGCCGCAGACAGTGGGGACTTTGTACTGCCATCGTGTACGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCAACCCAAACATGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGA

Protein sequence

MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFIALLNGLSYNVKTQPKHVKRLFDSWRPSLSSH
Homology
[Close]
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match: A0A5D3E392 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00110 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFIALLNGLSYNV 60
           MSP+ELMGTR  RVSEGRYV SGSK+KRGGQ  DSGD              +   + Y V
Sbjct: 229 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGD-------------VIRTAIEY-V 288

Query: 61  KTQPKHVKRLFDSWRPSLS 80
           KTQ KHVKRLFDSWRPSLS
Sbjct: 289 KTQAKHVKRLFDSWRPSLS 293

[Close]
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match: A0A5A7VFI4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00470 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFIALLNGLSYNV 60
           MSP+ELMGTR  RVSEGRYV SGSK+KRGGQ  DSGD              +   + Y V
Sbjct: 123 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGD-------------VIRTAIEY-V 182

Query: 61  KTQPKHVKRLFDSWRPSLS 80
           KTQ KHVKRLFDSWRPSLS
Sbjct: 183 KTQAKHVKRLFDSWRPSLS 187

[Close]
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match: A0A5D3C2D3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00220 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFI-ALLNGLSYN 60
           MSPDELMGTR A VS+GRYVSSGSKRKRGGQA DSGD +  +    N  +  +   L   
Sbjct: 87  MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAKWLVLQ 146

Query: 61  VKTQPKHVKRLFDSWRPSLS 80
            +   +  + + DSWRPSLS
Sbjct: 147 RQDASQTCQEVVDSWRPSLS 166

[Close]
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match: A0A5D3CW35 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00080 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1  MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCT-EMNNFIALLNGLSYN 60
          MSPDE+MGT+ AR S+GR VSS SKRKRGGQ+ ++GD +  +    +NN   LL   SYN
Sbjct: 1  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYN 60

Query: 61 VKTQPKHVKRLFDSWRPS 78
           KTQ +  KR FDS+R S
Sbjct: 61 GKTQAQG-KRSFDSYRSS 77

[Close]
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNN 49
           MSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGD VL +  E  N
Sbjct: 385 MSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGD-VLRTTIEYGN 431

[Close]
BLAST of IVF0026913 vs. NCBI nr
Match: KAA0065970.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 2.44e-20
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFIALLNGLSYNV 60
           MSP+ELMGTR  RVSEGRYV SGSK+KRGGQ  DSGD +  +             + Y V
Sbjct: 123 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTA-------------IEY-V 182

Query: 61  KTQPKHVKRLFDSWRPSLS 79
           KTQ KHVKRLFDSWRPSLS
Sbjct: 183 KTQAKHVKRLFDSWRPSLS 187

[Close]
BLAST of IVF0026913 vs. NCBI nr
Match: TYK30259.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.78e-19
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFIALLNGLSYNV 60
           MSP+ELMGTR  RVSEGRYV SGSK+KRGGQ  DSGD +  +             + Y V
Sbjct: 229 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTA-------------IEY-V 288

Query: 61  KTQPKHVKRLFDSWRPSLS 79
           KTQ KHVKRLFDSWRPSLS
Sbjct: 289 KTQAKHVKRLFDSWRPSLS 293

[Close]
BLAST of IVF0026913 vs. NCBI nr
Match: KAA0063768.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.70e-15
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNNFI-ALLNGLSYN 60
           MSPDELMGTR A VS+GRYVSSGSKRKRGGQA DSGD +  +    N  +  +   L   
Sbjct: 87  MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAKWLVLQ 146

Query: 61  VKTQPKHVKRLFDSWRPSLS 79
            +   +  + + DSWRPSLS
Sbjct: 147 RQDASQTCQEVVDSWRPSLS 166

[Close]
BLAST of IVF0026913 vs. NCBI nr
Match: KAA0066105.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15144.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.26e-15
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1  MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEM-NNFIALLNGLSYN 60
          MSPDE+MGT+ AR S+GR VSS SKRKRGGQ+ ++GD +  +   + NN   LL   SYN
Sbjct: 1  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYN 60

Query: 61 VKTQPKHVKRLFDSWRPS 77
           KTQ +  KR FDS+R S
Sbjct: 61 GKTQAQG-KRSFDSYRSS 77

[Close]
BLAST of IVF0026913 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.42e-12
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1   MSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDFVLPSCTEMNN 48
           MSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGD VL +  E  N
Sbjct: 385 MSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGD-VLRTTIEYGN 431

The following BLAST results are available for this feature:
BLAST of IVF0026913 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0026913 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E3924.5e-1563.29Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFI44.5e-1563.29Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C2D33.0e-1153.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CW353.4e-1055.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BRF01.3e-0981.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0026913 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065970.12.44e-2063.29retrotransposon protein [Cucumis melo var. makuwa][more]
TYK30259.11.78e-1963.29retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063768.12.70e-1553.75retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon p... [more]
KAA0066105.17.26e-1555.13retrotransposon protein [Cucumis melo var. makuwa] >TYK15144.1 retrotransposon p... [more]
KAA0060558.11.42e-1281.25retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p... [more]
BLAST of IVF0026913 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026913.1IVF0026913.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding