IVF0026800 (gene) Melon (IVF77) v1

Overview
NameIVF0026800
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 21869808 .. 21870017 (-)
RNA-Seq ExpressionIVF0026800
SyntenyIVF0026800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAAAGGAAGGCCATAAGGGATCAAGGGGCAAAACGCCTAAAAAAAGTGGCAGACGAAAGAGACAAAGAGATGAACGTGATAATCCCAGATGAAGGAAGGCTATCGCAAGAATGTAATGTATTAAAAACCGCAGAAACCAGAAAAGTAAAGAAATTCAAGGCAGGGTCATCAAGACCTAAGGAGACCCAAAAAAGGGAAAGATAG

mRNA sequence

ATGGTCAAAAGGAAGGCCATAAGGGATCAAGGGGCAAAACGCCTAAAAAAAGTGGCAGACGAAAGAGACAAAGAGATGAACGTGATAATCCCAGATGAAGGAAGGCTATCGCAAGAATGTAATGTATTAAAAACCGCAGAAACCAGAAAAGTAAAGAAATTCAAGGCAGGGTCATCAAGACCTAAGGAGACCCAAAAAAGGGAAAGATAG

Coding sequence (CDS)

ATGGTCAAAAGGAAGGCCATAAGGGATCAAGGGGCAAAACGCCTAAAAAAAGTGGCAGACGAAAGAGACAAAGAGATGAACGTGATAATCCCAGATGAAGGAAGGCTATCGCAAGAATGTAATGTATTAAAAACCGCAGAAACCAGAAAAGTAAAGAAATTCAAGGCAGGGTCATCAAGACCTAAGGAGACCCAAAAAAGGGAAAGATAG

Protein sequence

MVKRKAIRDQGAKRLKKVADERDKEMNVIIPDEGRLSQECNVLKTAETRKVKKFKAGSSRPKETQKRER
Homology
BLAST of IVF0026800 vs. ExPASy TrEMBL
Match: A0A5A7V279 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00780 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 3  KRKAIRDQGAKRLKKVADERDKEMNVIIPDEGRLSQECNVLKTAETRKVKKFKAGSSRPK 62
          K KAI +Q  +RL+ VA+E D+E+N I P EGRLS E   +K   T K KK K GSS+P+
Sbjct: 15 KNKAIGEQQVERLEVVAEELDEELNAISPLEGRLSPEYEGMKATSTSKAKKLKLGSSKPE 74

Query: 63 ET 65
          +T
Sbjct: 75 KT 76

BLAST of IVF0026800 vs. NCBI nr
Match: KAA0060596.1 (hypothetical protein E6C27_scaffold22G004720 [Cucumis melo var. makuwa] >TYK02275.1 hypothetical protein E5676_scaffold18G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.15e-08
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 3  KRKAIRDQGAKRLKKVADERDKEMNVIIPDEGRLSQECNVLKTAETRKVKKFKAGSSRPK 62
          K KAI +Q  +RL+ VA+E D+E+N I P EGRLS E   +K   T K KK K GSS+P+
Sbjct: 15 KNKAIGEQQVERLEVVAEELDEELNAISPLEGRLSPEYEGMKATSTSKAKKLKLGSSKPE 74

Query: 63 ET 64
          +T
Sbjct: 75 KT 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2794.7e-0551.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060596.14.15e-0851.61hypothetical protein E6C27_scaffold22G004720 [Cucumis melo var. makuwa] >TYK0227... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026800.1IVF0026800.1mRNA