IVF0026217 (gene) Melon (IVF77) v1

Overview


Name	IVF0026217
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	centromere protein X isoform X2
Location	chr02: 22626344 .. 22627514 (-)
RNA-Seq Expression	IVF0026217
Synteny	IVF0026217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGCGGGTGCGGGGACAAGTCGAAATTTGAAACTTGAAAGTTGCGTCTGACGGACTTGCACTCCTCAGTTTCAACTCACCATGGAAGAGACCGGATTTCATCCTGTAATTCTCTCATCTTCGTTCAAGTTCAATTCATCATTTGATTGTTCAAATAGTCTGCTACGTCTACGTTTTCCTTTCAATTTGGGGCGTTTATGTGTATAATTCACAGGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGGTTAGGACTTCGGATCACTCTCTCCTTCTGTCTACCTATCTGTTTTCACTTCTTCGTTCTCTCGTTTCTGATCACTTCTTCATTTCAGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTGGTTCTCTTTCGTGAGTTTCTTGTGAAAATTTCTTTTCAACTGCTGTTGTTATCTTTCTTGAAAATGTTTGTCATCGTTTTGTGTTTCGATTTCACTGGCACTAGGTTAATCTATGAATGCTCTTGTTACTTCTTGAATTGATATGAAAAATTGATACGTAGTCTAGCGAATTTAACAAAAAATCAGCGGTTATCTATTTTGTTGCAAACTTGGAGTAAGGCTTTTTCTCGACTAGACCAGTGGAGTTGATCTTTAGCTTACTTATCTTCAGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCAATGTCAGGTATCTTTAGTTTTTACTTCAACGACTTACTATTATTTCGTTTTTAAATTACTGTCTCTTAGGAGTGCTATTTTCCATCGAGCTGCTGTTATTTGAATGATTACCGTCTACTGAGAGATGTTGAAACCATTTCTGACCTCGCTGTTTTAATTTTCCATGCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGGTATCTGTGTTGAAACGTCAGATGGTTAATTTGGTGTCTAATGTTTCCTTCTTCTTTTAGGTCAACTTTTCTATTTGTGCAGAGGCTGTGCAGCGCGCTGCAACAATTGCAGAAGCAGAAGGTATTGGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTATTACTGGATTTTTGAGGTAGCATTCCGTTCCACACATTGCAATGTCTTTGCTCTTGAAGATTAAGTTCTTG

mRNA sequence

AAACGCGGGTGCGGGGACAAGTCGAAATTTGAAACTTGAAAGTTGCGTCTGACGGACTTGCACTCCTCAGTTTCAACTCACCATGGAAGAGACCGGATTTCATCCTGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCAATGTCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGGTATCTGTGTTGAAACGTCAGATGGTTAATTTGGTGTCTAATGTTTCCTTCTTCTTTTAGGTCAACTTTTCTATTTGTGCAGAGGCTGTGCAGCGCGCTGCAACAATTGCAGAAGCAGAAGGTATTGGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTATTACTGGATTTTTGAGGTAGCATTCCGTTCCACACATTGCAATGTCTTTGCTCTTGAAGATTAAGTTCTTG

Coding sequence (CDS)

ATGGAAGAGACCGGATTTCATCCTGATCTAATTCACGCCATTTTCAAGCTCGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTTGACGCTGGGGCTGGAACATCCAAGAAAAGCAGGCCAATGTCAGCTAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATCTCAGGTATCTGTGTTGAAACGTCAGATGGTTAA

Protein sequence

MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALKLSSKLVQIFISGICVETSDG

Homology

[Close]

BLAST of IVF0026217 vs. ExPASy Swiss-Prot
Match: Q8L7N3 (Protein MHF2 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF2 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 6  FHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALKLSSKL 65
          F  DLIHAIFK  W+RR  ERE+++  DA + EV    GT+KK+R  SANANALKLS +L
Sbjct: 7  FDSDLIHAIFKHIWARRFRERERSDAIDATEAEV--ALGTTKKNRLASANANALKLSCEL 66

Query: 66 VQIFIS 72
          ++ F+S
Sbjct: 67 LKSFVS 70

[Close]

BLAST of IVF0026217 vs. ExPASy TrEMBL
Match: A0A5D3BH88 (Centromere protein X isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00890 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 72
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. ExPASy TrEMBL
Match: A0A5A7UPL0 (Centromere protein X isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00860 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 72
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. ExPASy TrEMBL
Match: A0A1S3CLK5 (centromere protein X isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 72
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. ExPASy TrEMBL
Match: A0A0A0LU58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002850 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.4e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MEETGFHPDLIHAIFKLEWSRRSLEREKNE-NPDAMDCEVDAGAGTSKKSRPMSANANAL 60
           MEETGFHPDLIHAIFKLEWSRRSLEREKNE NPDAMDCEVDAGAGTSKKSRPMSANANAL
Sbjct: 72  MEETGFHPDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVDAGAGTSKKSRPMSANANAL 131

Query: 61  KLSSKLVQIFIS 72
           KLSSKLVQIFIS
Sbjct: 132 KLSSKLVQIFIS 143

[Close]

BLAST of IVF0026217 vs. ExPASy TrEMBL
Match: A0A1S3CLJ8 (centromere protein X isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-29
Identity = 69/76 (90.79%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFISGICVE 77
          LSSKLV      IC E
Sbjct: 61 LSSKLVNF---SICAE 73

[Close]

BLAST of IVF0026217 vs. NCBI nr
Match: XP_008464489.1 (PREDICTED: centromere protein X isoform X2 [Cucumis melo])

HSP 1 Score: 145 bits (365), Expect = 4.76e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 71
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. NCBI nr
Match: KAA0057803.1 (centromere protein X isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.16e-42
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 71
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. NCBI nr
Match: TYJ98487.1 (centromere protein X isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.58e-42
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFIS 71
          LSSKLVQIFIS
Sbjct: 61 LSSKLVQIFIS 71

[Close]

BLAST of IVF0026217 vs. NCBI nr
Match: XP_008464488.1 (PREDICTED: centromere protein X isoform X1 [Cucumis melo])

HSP 1 Score: 138 bits (347), Expect = 2.72e-40
Identity = 69/76 (90.79%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60
          MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK
Sbjct: 1  MEETGFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALK 60

Query: 61 LSSKLVQIFISGICVE 76
          LSSKLV      IC E
Sbjct: 61 LSSKLVNF---SICAE 73

[Close]

BLAST of IVF0026217 vs. NCBI nr
Match: XP_031736274.1 (protein MHF2 homolog isoform X2 [Cucumis sativus] >KGN63516.1 hypothetical protein Csa_013243 [Cucumis sativus])

HSP 1 Score: 140 bits (353), Expect = 2.83e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MEETGFHPDLIHAIFKLEWSRRSLEREKNEN-PDAMDCEVDAGAGTSKKSRPMSANANAL 60
           MEETGFHPDLIHAIFKLEWSRRSLEREKNEN PDAMDCEVDAGAGTSKKSRPMSANANAL
Sbjct: 72  MEETGFHPDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVDAGAGTSKKSRPMSANANAL 131

Query: 61  KLSSKLVQIFIS 71
           KLSSKLVQIFIS
Sbjct: 132 KLSSKLVQIFIS 143

[Close]

BLAST of IVF0026217 vs. TAIR 10
Match: AT1G78790.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 6  FHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSRPMSANANALKLSSKL 65
          F  DLIHAIFK  W+RR  ERE+++  DA + EV    GT+KK+R  SANANALKLS +L
Sbjct: 7  FDSDLIHAIFKHIWARRFRERERSDAIDATEAEV--ALGTTKKNRLASANANALKLSCEL 66

Query: 66 VQIFIS 72
          ++ F+S
Sbjct: 67 LKSFVS 70

[Close]

BLAST of IVF0026217 vs. TAIR 10
Match: AT1G78790.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 6  FHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGAGTSKKSR 51
          F  DLIHAIFK  W+RR  ERE+++  DA + EV    GT+KK+R
Sbjct: 7  FDSDLIHAIFKHIWARRFRERERSDAIDATEAEV--ALGTTKKNR 49

The following BLAST results are available for this feature:

BLAST of IVF0026217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7N3	1.4e-10	56.06	Protein MHF2 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF2 PE=3 SV=1	[more]

BLAST of IVF0026217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH88	2.6e-31	100.00	Centromere protein X isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UPL0	2.6e-31	100.00	Centromere protein X isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3CLK5	2.6e-31	100.00	centromere protein X isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=3 SV=...	[more]
A0A0A0LU58	6.4e-30	98.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002850 PE=3 SV=1	[more]
A0A1S3CLJ8	4.2e-29	90.79	centromere protein X isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502356 PE=3 SV=...	[more]

BLAST of IVF0026217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464489.1	4.76e-43	100.00	PREDICTED: centromere protein X isoform X2 [Cucumis melo]	[more]
KAA0057803.1	1.16e-42	100.00	centromere protein X isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98487.1	1.58e-42	100.00	centromere protein X isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008464488.1	2.72e-40	90.79	PREDICTED: centromere protein X isoform X1 [Cucumis melo]	[more]
XP_031736274.1	2.83e-40	98.61	protein MHF2 homolog isoform X2 [Cucumis sativus] >KGN63516.1 hypothetical prote...	[more]

BLAST of IVF0026217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78790.1	1.0e-11	56.06	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008...	[more]
AT1G78790.2	3.2e-05	53.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026217.1	IVF0026217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0051382	kinetochore assembly
biological_process	GO:0031297	replication fork processing
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0043240	Fanconi anaemia nuclear complex
molecular_function	GO:0003677	DNA binding