IVF0025640 (gene) Melon (IVF77) v1

Overview


Name	IVF0025640
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr12: 20047343 .. 20048008 (-)
RNA-Seq Expression	IVF0025640
Synteny	IVF0025640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGGTAAAATTACTAATAGTTCTTTTACTTTTATTTTTTCCAAGACTATTATGTTTGTGTGTGAAAAGTCTATCAATGGTAGAATTGTATCAATGATAGACTATTCTTTCTATGATTTAAGTCTATTAGTGATAGACTATTCTGAAATTTCAATTCTGATTCAAAAGTCTATCAATGATAGGATATTGACAATTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTGCAAAAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATGTATATATGTAGATAAACTCTAATTCAATATTATATATTTTCAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Coding sequence (CDS)

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Protein sequence

MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL

Homology

[Close]

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7TDE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003290 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQIS 112
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+DLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

[Close]

BLAST of IVF0025640 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 5.91e-64
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 9.71e-63
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 2.40e-62
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0025640 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 2.40e-62
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0039507.1 (hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 2.01e-59
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQIS 111
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+DLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

The following BLAST results are available for this feature:

BLAST of IVF0025640 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIA9	5.1e-49	99.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CTS8	5.1e-49	99.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFX6	5.1e-49	99.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDY1	4.3e-48	97.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TDE0	1.5e-45	94.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0025640 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15261.1	5.91e-64	99.12	hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]	[more]
KAA0065297.1	9.71e-63	97.35	hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]	[more]
KAA0031317.1	2.40e-62	99.12	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK22453.1	2.40e-62	99.12	uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]	[more]
KAA0039507.1	2.01e-59	94.59	hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025640.2	IVF0025640.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome