IVF0025640 (gene) Melon (IVF77) v1

Overview
NameIVF0025640
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr12: 20047343 .. 20048008 (-)
RNA-Seq ExpressionIVF0025640
SyntenyIVF0025640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGCTGATGTTGATAAAGAGAAAGAGGTAAAATTACTAATAGTTCTTTTACTTTTATTTTTTCCAAGACTATTATGTTTGTGTGTGAAAAGTCTATCAATGGTAGAATTGTATCAATGATAGACTATTCTTTCTATGATTTAAGTCTATTAGTGATAGACTATTCTGAAATTTCAATTCTGATTCAAAAGTCTATCAATGATAGGATATTGACAATTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTGCAAAAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATGTATATATGTAGATAAACTCTAATTCAATATTATATATTTTCAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Coding sequence (CDS)

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCAAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGATATTCTCCTAGAATAAGGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Protein sequence

MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Homology
BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

BLAST of IVF0025640 vs. ExPASy TrEMBL
Match: A0A5A7TDE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003290 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQIS 112
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+DLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

BLAST of IVF0025640 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 5.91e-64
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 9.71e-63
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT++SPRIRDLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 2.40e-62
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

BLAST of IVF0025640 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 2.40e-62
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

BLAST of IVF0025640 vs. NCBI nr
Match: KAA0039507.1 (hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 2.01e-59
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MIDADVDKEKEIEDNEETKEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEET+EDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQIS 111
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTR+SPRI+DLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIA95.1e-4999.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CTS85.1e-4999.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFX65.1e-4999.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDY14.3e-4897.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TDE01.5e-4594.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK15261.15.91e-6499.12hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa][more]
KAA0065297.19.71e-6397.35hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa][more]
KAA0031317.12.40e-6299.12uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0... [more]
TYK22453.12.40e-6299.12uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa][more]
KAA0039507.12.01e-5994.59hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025640.2IVF0025640.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome