IVF0025458 (gene) Melon (IVF77) v1

Overview
NameIVF0025458
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Locationchr08: 874278 .. 874532 (-)
RNA-Seq ExpressionIVF0025458
SyntenyIVF0025458
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

mRNA sequence

ATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

Coding sequence (CDS)

ATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

Protein sequence

MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSASMAVGANSMYFVRNISRPFSKFND
Homology
BLAST of IVF0025458 vs. ExPASy TrEMBL
Match: A0A5D3CN92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009220 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 85
          SMAVGANSMYFVRNISRPFSKFND
Sbjct: 61 SMAVGANSMYFVRNISRPFSKFND 84

BLAST of IVF0025458 vs. ExPASy TrEMBL
Match: A0A0A0KI68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAP RSLSSS+TSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 85
          SM V ANSMYFVRNISRPFSK ND
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIND 84

BLAST of IVF0025458 vs. ExPASy TrEMBL
Match: A0A7N2LPW5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-13
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFV+EVAPPQ ISV+R+RTSK+LDTI EE+R+ + N+  A   RS SS+STS+
Sbjct: 1  MANSRIARFVSEVAPPQYISVIRQRTSKMLDTIKEEERDASANDSHAMLPRSSSSTSTSS 60

Query: 61 SMAVGA-----NSMYFVRNISRPFSKFN 84
          + A  A     +S YF+R +   FS F+
Sbjct: 61 ASASSATTTNSDSKYFLRKVHESFSVFD 88

BLAST of IVF0025458 vs. ExPASy TrEMBL
Match: B9S0W8 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0630180 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARF+TEVAPPQ ISV+RRR SK+LDTI+EE+R+ + +   A+   S +S+ST+A
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLASAPTSPASASTNA 60

Query: 61 SMA-----VGANSMYFVRNISRPFSKFND 85
          + A     V  NS YF R + R FS F +
Sbjct: 61 ASASAAAPVATNSKYFPRRVQRSFSVFQN 89

BLAST of IVF0025458 vs. ExPASy TrEMBL
Match: A0A3N7FR06 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081001 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNE-YPAAPQRSLSSSSTS 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEEDR+   ++ +P AP  S +  +TS
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSS-TIVTTS 60

Query: 61 ASMAVGANSMYFVRNISRPFSKF 83
          A+     NS YF + I R FS F
Sbjct: 61 ATSVAAKNSTYFFKGIRRSFSLF 82

BLAST of IVF0025458 vs. NCBI nr
Match: KAA0052524.1 (hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK13301.1 hypothetical protein E5676_scaffold255G009220 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 8.20e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 84
          SMAVGANSMYFVRNISRPFSKFND
Sbjct: 61 SMAVGANSMYFVRNISRPFSKFND 84

BLAST of IVF0025458 vs. NCBI nr
Match: KGN49420.1 (hypothetical protein Csa_003492 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 5.35e-46
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAP RSLSSS+TSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 84
          SM V ANSMYFVRNISRPFSK ND
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIND 84

BLAST of IVF0025458 vs. NCBI nr
Match: KAG6594447.1 (hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (285), Expect = 4.61e-31
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+C+K EYPA+P  S S S+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDCSKYEYPASPI-SPSPSTTPA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 84
             V ANS YFVRNI+R FS  N+
Sbjct: 61 PATVSANSRYFVRNINRSFSTLNN 83

BLAST of IVF0025458 vs. NCBI nr
Match: KAG7034740.1 (hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101 bits (252), Expect = 2.20e-25
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60

Query: 61 SMAVGANSM 69
           M V ANS+
Sbjct: 61 PMVVSANSI 68

BLAST of IVF0025458 vs. NCBI nr
Match: XP_025013214.1 (uncharacterized protein LOC8284058 [Ricinus communis] >EEF42610.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 84.3 bits (207), Expect = 4.13e-19
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARF+TEVAPPQ ISV+RRR SK+LDTI+EE+R+ + +   A+   S +S+ST+A
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLASAPTSPASASTNA 60

Query: 61 SMA-----VGANSMYFVRNISRPFSKFND 84
          + A     V  NS YF R + R FS F +
Sbjct: 61 ASASAAAPVATNSKYFPRRVQRSFSVFQN 89

BLAST of IVF0025458 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECN--------------KNEYP 60
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EE+RE                 + + 
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 AAPQRSLSSSSTSASMAVGANSMYFVRN 75
          +    S+SS+S SAS   G N      N
Sbjct: 61 SPYSSSVSSASASASCTSGLNKFPVTEN 88

BLAST of IVF0025458 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEDRE 40
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EE+ +
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENK 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CN924.8e-36100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KI683.8e-3394.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1[more]
A0A7N2LPW57.5e-1355.68Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
B9S0W89.8e-1353.93Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0630180 PE=4 SV=1[more]
A0A3N7FR062.2e-1257.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081001 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAA0052524.18.20e-50100.00hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK133... [more]
KGN49420.15.35e-4694.05hypothetical protein Csa_003492 [Cucumis sativus][more]
KAG6594447.14.61e-3175.00hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034740.12.20e-2581.16hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_025013214.14.13e-1953.93uncharacterized protein LOC8284058 [Ricinus communis] >EEF42610.1 conserved hypo... [more]
Match NameE-valueIdentityDescription
AT1G30260.13.1e-1145.45BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.5e-0558.54Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025458.1IVF0025458.1mRNA