Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG
mRNA sequence
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG
Coding sequence (CDS)
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG
Protein sequence
MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
Homology
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match:
A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)
HSP 1 Score: 283.5 bits (724), Expect = 4.9e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336
Query: 121 KQMPNDERASFCRVILRDISR 142
KQMPNDERASFCRVILRDISR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match:
A0A5D3E168 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00050 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M +RNEEFP VYSQGID+SQ+DV ASR S SEGR ESS SKRKRGSQREV+++ IH+ L
Sbjct: 24 MGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLAL 83
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
+ TN+QLKMI EWPAC L NDNHV EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 84 DQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 143
Query: 121 KQMPNDERASFCRVILRDISR 142
MP DER FCRV+LRDI+R
Sbjct: 144 VLMPEDERDGFCRVLLRDITR 164
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match:
A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 2.1e-47
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
+P+ N+EFPSVY+QGI++SQEDVRAS+ S EGRV SS SKRKRGSQ+E E++VI+M
Sbjct: 103 IPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAR 162
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
ECTNDQLK++ EWPA LANDNHV Q+FF IL MPELT LDR+LLQRHLLS M D+RGF
Sbjct: 163 ECTNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGF 222
Query: 121 KQMPNDERASFCRVILRDISR 142
QMP+DER SFC VILRDISR
Sbjct: 223 IQMPDDERESFCGVILRDISR 243
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match:
A0A5D3B6Y0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00160 PE=4 SV=1)
HSP 1 Score: 193.7 bits (491), Expect = 5.1e-46
Identity = 97/141 (68.79%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M + NE+FP VYSQGID+SQ+DVRASR S SEGR SS SKRKRGSQR+ +++ IH+ L
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
+ TN+QL+ I EWPAC LANDNHV EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261
Query: 121 KQMPNDERASFCRVILRDISR 142
MP DER FCRV+LRDI R
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match:
A0A5A7V948 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00040 PE=4 SV=1)
HSP 1 Score: 193.0 bits (489), Expect = 8.6e-46
Identity = 96/141 (68.09%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M + NEEFP VYSQGID+SQ+DVRA R SC SEGR SS SKRKRGSQ++ ++K IH+ L
Sbjct: 119 MGDENEEFPPVYSQGIDLSQDDVRAFRPSCASEGRTGSSGSKRKRGSQQDFDVKAIHLAL 178
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
TN+QL+ I EWPA LANDNHVH +FF IL EMPELT LDR+LLQRHLLS M ++RGF
Sbjct: 179 GQTNEQLRQIAEWPARTLANDNHVHTKFFRILREMPELTSLDRALLQRHLLSRMDNLRGF 238
Query: 121 KQMPNDERASFCRVILRDISR 142
MP DER FCRV+LRDI+R
Sbjct: 239 VLMPEDEREGFCRVLLRDITR 259
BLAST of IVF0025430 vs. NCBI nr
Match:
KAA0060654.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 282 bits (721), Expect = 1.28e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336
Query: 121 KQMPNDERASFCRVILRDISR 141
KQMPNDERASFCRVILRDISR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357
BLAST of IVF0025430 vs. NCBI nr
Match:
TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 201 bits (511), Expect = 2.11e-63
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M +RNEEFP VYSQGID+SQ+DV ASR S SEGR ESS SKRKRGSQREV+++ IH+ L
Sbjct: 24 MGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLAL 83
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
+ TN+QLKMI EWPAC L NDNHV EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 84 DQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 143
Query: 121 KQMPNDERASFCRVILRDISR 141
MP DER FCRV+LRDI+R
Sbjct: 144 VLMPEDERDGFCRVLLRDITR 164
BLAST of IVF0025430 vs. NCBI nr
Match:
KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 197 bits (500), Expect = 1.21e-60
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
+P+ N+EFPSVY+QGI++SQEDVRAS+ S EGRV SS SKRKRGSQ+E E++VI+M
Sbjct: 103 IPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAR 162
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
ECTNDQLK++ EWPA LANDNHV Q+FF IL MPELT LDR+LLQRHLLS M D+RGF
Sbjct: 163 ECTNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGF 222
Query: 121 KQMPNDERASFCRVILRDISR 141
QMP+DER SFC VILRDISR
Sbjct: 223 IQMPDDERESFCGVILRDISR 243
BLAST of IVF0025430 vs. NCBI nr
Match:
TYK01823.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 187 bits (476), Expect = 2.13e-58
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M + NE+F VYSQGID+SQ+DVRASR S SEGR SS SKRKRGSQR+ E++ IH+ L
Sbjct: 1 MGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 60
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
+ TN+QL+ I EWPA LANDNHV EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 61 DQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
Query: 121 KQMPNDERASFCRVILRDISR 141
MP DER FCRV+LRDI R
Sbjct: 121 VLMPEDEREEFCRVLLRDIER 141
BLAST of IVF0025430 vs. NCBI nr
Match:
KAA0054705.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 192 bits (488), Expect = 2.55e-58
Identity = 97/141 (68.79%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 1 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
M + NE+FP VYSQGID+SQ+DVRASR S SEGR SS SKRKRGSQR+ +++ IH+ L
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201
Query: 61 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
+ TN+QL+ I EWPAC LANDNHV EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261
Query: 121 KQMPNDERASFCRVILRDISR 141
MP DER FCRV+LRDI R
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V026 | 4.9e-73 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3E168 | 1.1e-48 | 72.34 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BD15 | 2.1e-47 | 71.63 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3B6Y0 | 5.1e-46 | 68.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V948 | 8.6e-46 | 68.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060654.1 | 1.28e-92 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon p... | [more] |
TYK29656.1 | 2.11e-63 | 72.34 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065782.1 | 1.21e-60 | 71.63 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... | [more] |
TYK01823.1 | 2.13e-58 | 68.09 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0054705.1 | 2.55e-58 | 68.79 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |