IVF0025430 (gene) Melon (IVF77) v1

Overview
NameIVF0025430
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 18359371 .. 18359796 (+)
RNA-Seq ExpressionIVF0025430
SyntenyIVF0025430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG

mRNA sequence

ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG

Coding sequence (CDS)

ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGAATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGCCTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTCTTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG

Protein sequence

MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
Homology
BLAST of IVF0025430 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.9e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336

Query: 121 KQMPNDERASFCRVILRDISR 142
           KQMPNDERASFCRVILRDISR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357

BLAST of IVF0025430 vs. ExPASy TrEMBL
Match: A0A5D3E168 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00050 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M +RNEEFP VYSQGID+SQ+DV ASR S  SEGR ESS SKRKRGSQREV+++ IH+ L
Sbjct: 24  MGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLAL 83

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           + TN+QLKMI EWPAC L NDNHV  EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 84  DQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 143

Query: 121 KQMPNDERASFCRVILRDISR 142
             MP DER  FCRV+LRDI+R
Sbjct: 144 VLMPEDERDGFCRVLLRDITR 164

BLAST of IVF0025430 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.1e-47
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           +P+ N+EFPSVY+QGI++SQEDVRAS+ S   EGRV SS SKRKRGSQ+E E++VI+M  
Sbjct: 103 IPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAR 162

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           ECTNDQLK++ EWPA  LANDNHV Q+FF IL  MPELT LDR+LLQRHLLS M D+RGF
Sbjct: 163 ECTNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGF 222

Query: 121 KQMPNDERASFCRVILRDISR 142
            QMP+DER SFC VILRDISR
Sbjct: 223 IQMPDDERESFCGVILRDISR 243

BLAST of IVF0025430 vs. ExPASy TrEMBL
Match: A0A5D3B6Y0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00160 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.1e-46
Identity = 97/141 (68.79%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M + NE+FP VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ +++ IH+ L
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           + TN+QL+ I EWPAC LANDNHV  EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 KQMPNDERASFCRVILRDISR 142
             MP DER  FCRV+LRDI R
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

BLAST of IVF0025430 vs. ExPASy TrEMBL
Match: A0A5A7V948 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00040 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.6e-46
Identity = 96/141 (68.09%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M + NEEFP VYSQGID+SQ+DVRA R SC SEGR  SS SKRKRGSQ++ ++K IH+ L
Sbjct: 119 MGDENEEFPPVYSQGIDLSQDDVRAFRPSCASEGRTGSSGSKRKRGSQQDFDVKAIHLAL 178

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
             TN+QL+ I EWPA  LANDNHVH +FF IL EMPELT LDR+LLQRHLLS M ++RGF
Sbjct: 179 GQTNEQLRQIAEWPARTLANDNHVHTKFFRILREMPELTSLDRALLQRHLLSRMDNLRGF 238

Query: 121 KQMPNDERASFCRVILRDISR 142
             MP DER  FCRV+LRDI+R
Sbjct: 239 VLMPEDEREGFCRVLLRDITR 259

BLAST of IVF0025430 vs. NCBI nr
Match: KAA0060654.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (721), Expect = 1.28e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336

Query: 121 KQMPNDERASFCRVILRDISR 141
           KQMPNDERASFCRVILRDISR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357

BLAST of IVF0025430 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (511), Expect = 2.11e-63
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M +RNEEFP VYSQGID+SQ+DV ASR S  SEGR ESS SKRKRGSQREV+++ IH+ L
Sbjct: 24  MGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLAL 83

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           + TN+QLKMI EWPAC L NDNHV  EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 84  DQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 143

Query: 121 KQMPNDERASFCRVILRDISR 141
             MP DER  FCRV+LRDI+R
Sbjct: 144 VLMPEDERDGFCRVLLRDITR 164

BLAST of IVF0025430 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 1.21e-60
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           +P+ N+EFPSVY+QGI++SQEDVRAS+ S   EGRV SS SKRKRGSQ+E E++VI+M  
Sbjct: 103 IPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAR 162

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           ECTNDQLK++ EWPA  LANDNHV Q+FF IL  MPELT LDR+LLQRHLLS M D+RGF
Sbjct: 163 ECTNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGF 222

Query: 121 KQMPNDERASFCRVILRDISR 141
            QMP+DER SFC VILRDISR
Sbjct: 223 IQMPDDERESFCGVILRDISR 243

BLAST of IVF0025430 vs. NCBI nr
Match: TYK01823.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 2.13e-58
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M + NE+F  VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ E++ IH+ L
Sbjct: 1   MGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 60

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           + TN+QL+ I EWPA  LANDNHV  EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 61  DQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 KQMPNDERASFCRVILRDISR 141
             MP DER  FCRV+LRDI R
Sbjct: 121 VLMPEDEREEFCRVLLRDIER 141

BLAST of IVF0025430 vs. NCBI nr
Match: KAA0054705.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (488), Expect = 2.55e-58
Identity = 97/141 (68.79%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 1   MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 60
           M + NE+FP VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ +++ IH+ L
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 120
           + TN+QL+ I EWPAC LANDNHV  EFF IL EMPELT LDR+LLQRHLLS M D+RGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 KQMPNDERASFCRVILRDISR 141
             MP DER  FCRV+LRDI R
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V0264.9e-73100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E1681.1e-4872.34Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BD152.1e-4771.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3B6Y05.1e-4668.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9488.6e-4668.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060654.11.28e-92100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon p... [more]
TYK29656.12.11e-6372.34retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065782.11.21e-6071.63retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... [more]
TYK01823.12.13e-5868.09retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054705.12.55e-5868.79retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025430.1IVF0025430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding