IVF0025378 (gene) Melon (IVF77) v1

Overview
NameIVF0025378
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 7538373 .. 7538540 (-)
RNA-Seq ExpressionIVF0025378
SyntenyIVF0025378
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGACTGGCAGTTACGTAACGCTTAG

mRNA sequence

ATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGACTGGCAGTTACGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGACTGGCAGTTACGTAACGCTTAG

Protein sequence

MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
Homology
BLAST of IVF0025378 vs. ExPASy TrEMBL
Match: A0A1S3BNP1 (uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 56
           MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of IVF0025378 vs. ExPASy TrEMBL
Match: A0A5A7UJ27 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00570 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 53
           MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Sbjct: 241 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 292

BLAST of IVF0025378 vs. ExPASy TrEMBL
Match: A0A5D3DXP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00500 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 53
          MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Sbjct: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52

BLAST of IVF0025378 vs. ExPASy TrEMBL
Match: A0A5A7VGD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00510 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 56
           MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQLRNA
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 157

BLAST of IVF0025378 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 56
          MTYCDD+DDVDEGD AYATTT  E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0025378 vs. NCBI nr
Match: XP_008450472.1 (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 119 bits (299), Expect = 2.57e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 55
           MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of IVF0025378 vs. NCBI nr
Match: TYK28139.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 5.30e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52
          MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Sbjct: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52

BLAST of IVF0025378 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 5.13e-29
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 55
          MTYCDD+DDVDEGD AYATTT  E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0025378 vs. NCBI nr
Match: KAA0066137.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 5.43e-29
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 55
           MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQLRNA
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 157

BLAST of IVF0025378 vs. NCBI nr
Match: KAA0055933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 8.00e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52
           MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Sbjct: 241 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 292

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BNP12.8e-24100.00uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=... [more]
A0A5A7UJ272.0e-22100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DXP62.0e-22100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGD32.2e-2190.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDZ01.9e-2087.27Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008450472.12.57e-32100.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
TYK28139.15.30e-30100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054051.15.13e-2987.27retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0066137.15.43e-2990.91retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon p... [more]
KAA0055933.18.00e-28100.00retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025378.1IVF0025378.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding