Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA
mRNA sequence
ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA
Coding sequence (CDS)
ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA
Protein sequence
MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKYLHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE
Homology
BLAST of IVF0024843 vs. ExPASy Swiss-Prot
Match:
P05396 (Movement protein OS=Carnation etched ring virus OX=10640 GN=ORF I PE=3 SV=1)
HSP 1 Score: 45.4 bits (106), Expect = 7.1e-04
Identity = 22/54 (40.74%), Postives = 30/54 (55.56%), Query Frame = 0
Query: 113 KVRDRFKYLHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNL 167
KVR +H G ++V +K FREG+N P+ +AL D R S+LG NL
Sbjct: 111 KVRSTISDIHFGAIKVLIKARFREGINSPIKMALIDDRITDRQDSILGAAHGNL 164
BLAST of IVF0024843 vs. ExPASy TrEMBL
Match:
A0A5A7T8S7 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22487G00010 PE=4 SV=1)
HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. ExPASy TrEMBL
Match:
A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. ExPASy TrEMBL
Match:
A0A5A7UX67 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001460 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. ExPASy TrEMBL
Match:
A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. ExPASy TrEMBL
Match:
A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)
HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSPTIIDATASSSYSS S SN RS++DLSTALA+HN+AEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPTIIDATASSSYSSLS-SNSRSQDDLSTALAKHNTAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEA+QVYKINTFNFSQQD+IVITEENVAMKDEFTAIKLLPEETL KVR+RFKY
Sbjct: 61 KNWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 166
BLAST of IVF0024843 vs. NCBI nr
Match:
KAA0037875.1 (polyprotein [Cucumis melo var. makuwa] >TYK16867.1 polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 323 bits (827), Expect = 4.69e-111
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. NCBI nr
Match:
KAA0047922.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 292 bits (747), Expect = 6.01e-98
Identity = 152/167 (91.02%), Postives = 160/167 (95.81%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLS HS TIIDAT SSSYSSSS SNLR ++DLSTALA+HN+AEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSLHSLTIIDATVSSSYSSSSSSNLRPQDDLSTALAKHNTAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQ VIVITEENVAMKDEFT IKLLPEETLFKV+++FKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDEFTPIKLLPEETLFKVKEKFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. NCBI nr
Match:
KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 319 bits (817), Expect = 1.40e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. NCBI nr
Match:
TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 319 bits (817), Expect = 2.07e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
BLAST of IVF0024843 vs. NCBI nr
Match:
KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 319 bits (817), Expect = 2.07e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
Query: 1 MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1 MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
Query: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61 KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P05396 | 7.1e-04 | 40.74 | Movement protein OS=Carnation etched ring virus OX=10640 GN=ORF I PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7T8S7 | 2.1e-83 | 100.00 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22487G00010 ... | [more] |
A0A5D3BEY3 | 3.0e-82 | 98.80 | Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69... | [more] |
A0A5A7UX67 | 3.0e-82 | 98.80 | Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... | [more] |
A0A5A7UR29 | 3.0e-82 | 98.80 | Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48... | [more] |
A0A5D3BG41 | 1.2e-75 | 92.81 | Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56... | [more] |
Match Name | E-value | Identity | Description | |
KAA0037875.1 | 4.69e-111 | 100.00 | polyprotein [Cucumis melo var. makuwa] >TYK16867.1 polyprotein [Cucumis melo var... | [more] |
KAA0047922.1 | 6.01e-98 | 91.02 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0059217.1 | 1.40e-97 | 98.80 | Enzymatic polyprotein [Cucumis melo var. makuwa] | [more] |
TYJ97599.1 | 2.07e-97 | 98.80 | Enzymatic polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0056776.1 | 2.07e-97 | 98.80 | Enzymatic polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |