IVF0024843 (gene) Melon (IVF77) v1

Overview


Name	IVF0024843
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Polyprotein
Location	chr04: 11653119 .. 11653622 (+)
RNA-Seq Expression	IVF0024843
Synteny	IVF0024843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA

mRNA sequence

ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA

Coding sequence (CDS)

ATGCTTTCTAAACTACTCTCTAAGCTCTCTCCTCACTCTCCCACAATCATCGACGCTACCGCTTCCTCTTCTTACTCTTCTTCATCGCCTTCGAATCTGAGATCCAAAAATGATCTTTCAACAGCTCTTGCCGAGCATAATTCAGCCGAAGCCCATCTGGCTCAGGTTGAAAACCGACTCAAAAATTGGTCTATTCCAAAACTAGAGGCCAATCAAGTGTACAAAATCAACACCTTCAATTTTTCTCAGCAAGACGTTATAGTCATCACTGAAGAAAACGTAGCAATGAAAGATGAGTTCACTGCTATCAAACTCTTACCTGAAGAGACTCTCTTCAAAGTCAGAGACAGGTTCAAGTACCTTCACATAGGATGCGTTCAAGTTGCCTTGAAACCGCTCTTTAGAGAAGGGTTAAATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTCAGATTCACTCCCTCTCTCTTAGGGATTGTCCAATCAAACTTGGAATAA

Protein sequence

MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKYLHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE

Homology

[Close]

BLAST of IVF0024843 vs. ExPASy Swiss-Prot
Match: P05396 (Movement protein OS=Carnation etched ring virus OX=10640 GN=ORF I PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-04
Identity = 22/54 (40.74%), Postives = 30/54 (55.56%), Query Frame = 0


Query: 113 KVRDRFKYLHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNL 167
           KVR     +H G ++V +K  FREG+N P+ +AL D R      S+LG    NL
Sbjct: 111 KVRSTISDIHFGAIKVLIKARFREGINSPIKMALIDDRITDRQDSILGAAHGNL 164

[Close]

BLAST of IVF0024843 vs. ExPASy TrEMBL
Match: A0A5A7T8S7 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22487G00010 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
           LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. ExPASy TrEMBL
Match: A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. ExPASy TrEMBL
Match: A0A5A7UX67 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001460 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSPTIIDATASSSYSS S SN RS++DLSTALA+HN+AEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSLS-SNSRSQDDLSTALAKHNTAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEA+QVYKINTFNFSQQD+IVITEENVAMKDEFTAIKLLPEETL KVR+RFKY
Sbjct: 61  KNWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 168
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 166

[Close]

BLAST of IVF0024843 vs. NCBI nr
Match: KAA0037875.1 (polyprotein [Cucumis melo var. makuwa] >TYK16867.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (827), Expect = 4.69e-111
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
           LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. NCBI nr
Match: KAA0047922.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 292 bits (747), Expect = 6.01e-98
Identity = 152/167 (91.02%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLS HS TIIDAT SSSYSSSS SNLR ++DLSTALA+HN+AEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSLHSLTIIDATVSSSYSSSSSSNLRPQDDLSTALAKHNTAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQ VIVITEENVAMKDEFT IKLLPEETLFKV+++FKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDEFTPIKLLPEETLFKVKEKFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 319 bits (817), Expect = 1.40e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 319 bits (817), Expect = 2.07e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

[Close]

BLAST of IVF0024843 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 319 bits (817), Expect = 2.07e-97
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MLSKLLSKLSPHSPTIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60
           MLSKLLSKLSPHSP IIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL
Sbjct: 1   MLSKLLSKLSPHSPAIIDATASSSYSSSSPSNLRSKNDLSTALAEHNSAEAHLAQVENRL 60

Query: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120
           KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKLLPEETLFKVRDRFKY 120

Query: 121 LHIGCVQVALKPLFREGLNVPVYLALRDKRHLRFTPSLLGIVQSNLE 167
           LHIGCVQVALKPLFREGL+VPVYLALRDKRHLRFTPSLLGIVQSNLE
Sbjct: 121 LHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSNLE 167

The following BLAST results are available for this feature:

BLAST of IVF0024843 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05396	7.1e-04	40.74	Movement protein OS=Carnation etched ring virus OX=10640 GN=ORF I PE=3 SV=1	[more]

BLAST of IVF0024843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8S7	2.1e-83	100.00	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22487G00010 ...	[more]
A0A5D3BEY3	3.0e-82	98.80	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69...	[more]
A0A5A7UX67	3.0e-82	98.80	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7UR29	3.0e-82	98.80	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5D3BG41	1.2e-75	92.81	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56...	[more]

BLAST of IVF0024843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037875.1	4.69e-111	100.00	polyprotein [Cucumis melo var. makuwa] >TYK16867.1 polyprotein [Cucumis melo var...	[more]
KAA0047922.1	6.01e-98	91.02	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059217.1	1.40e-97	98.80	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97599.1	2.07e-97	98.80	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056776.1	2.07e-97	98.80	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024843 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
IPR028919	Viral movement protein	PFAM	PF01107	MP	coord: 85..166 e-value: 1.3E-10 score: 41.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024843.2	IVF0024843.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding