IVF0024688 (gene) Melon (IVF77) v1

Overview
NameIVF0024688
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 11421188 .. 11421409 (-)
RNA-Seq ExpressionIVF0024688
SyntenyIVF0024688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGATCGCAAGCCACCGCAACAAGTTCGTCCGCCGCCGCCACTAAAGATTCTGTGTTCATTCGCCGTTGAAGATCTAGTATGTTCGTCCACCGTCATTCAGAACAAGTTCATCCGCCACTGCTGTCGAAGATGTTTTGTTCATCTGCCACCGTTGCTGAAGACGTTGTGTTCGTCTGCCGCTAAAGGTTCGTCCGTTGTTGTGTTCGTCCGCTGCTGA

mRNA sequence

ATGCTCGATCGCAAGCCACCGCAACAAGTTCGTCCGCCGCCGCCACTAAAGATTCTGTGTTCATTCGCCGTTGAAGATCTAGTATGTTCGTCCACCGTCATTCAGAACAAGTTCATCCGCCACTGCTGTCGAAGATGTTTTGTTCATCTGCCACCGTTGCTGAAGACGTTGTGTTCGTCTGCCGCTAAAGGTTCGTCCGTTGTTGTGTTCGTCCGCTGCTGA

Coding sequence (CDS)

ATGCTCGATCGCAAGCCACCGCAACAAGTTCGTCCGCCGCCGCCACTAAAGATTCTGTGTTCATTCGCCGTTGAAGATCTAGTATGTTCGTCCACCGTCATTCAGAACAAGTTCATCCGCCACTGCTGTCGAAGATGTTTTGTTCATCTGCCACCGTTGCTGAAGACGTTGTGTTCGTCTGCCGCTAAAGGTTCGTCCGTTGTTGTGTTCGTCCGCTGCTGA

Protein sequence

MLDRKPPQQVRPPPPLKILCSFAVEDLVCSSTVIQNKFIRHCCRRCFVHLPPLLKTLCSSAAKGSSVVVFVRC
Homology
[Close]
BLAST of IVF0024688 vs. ExPASy TrEMBL
Match: A0A5A7T133 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001270 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 40/79 (50.63%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 1  MLDRKPPQQVRPPPPLKILCSFAVEDLV----CSSTVIQNKFIRH------------CCR 60
          MLDRKPPQQVRPPPPLK+LCSF VEDLV    CSS      FIRH            C  
Sbjct: 1  MLDRKPPQQVRPPPPLKMLCSFVVEDLVRPLLCSSAAEDVVFIRHNRLLHDASYRPSCST 60

Query: 61 RCFVHLPPLLKTLCSSAAK 64
             +H  P  +  CSS A+
Sbjct: 61 NRLLH-DPSCRPSCSSVAE 78

[Close]
BLAST of IVF0024688 vs. NCBI nr
Match: KAA0036603.1 (uncharacterized protein E6C27_scaffold191G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.76e-11
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MLDRKPPQQVRPPPPLKILCSFAVEDLV----CSSTVIQNKFIRH 41
          MLDRKPPQQVRPPPPLK+LCSF VEDLV    CSS      FIRH
Sbjct: 1  MLDRKPPQQVRPPPPLKMLCSFVVEDLVRPLLCSSAAEDVVFIRH 45

The following BLAST results are available for this feature:
BLAST of IVF0024688 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T1331.4e-0750.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0024688 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036603.15.76e-1173.33uncharacterized protein E6C27_scaffold191G001270 [Cucumis melo var. makuwa][more]
BLAST of IVF0024688 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024688.1IVF0024688.1mRNA