Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTGTCTCTCTTGTCACTGTAAAAAGGGAAGTCCCTGAAAGTTCTCCACCACGTACGTTTCACCATCTACATCCTTTTCTGTGCTGAGACCTCGAGGTTCAGTTGAGATAGTGGTGTTAGATTCGAACTCTTCTGATAGTGAAGACAATGTAGTTCTGTCGGCCATTCTTCATCGTAAGACTAGACATCCCACTGATCCATCACCTACTCCTCCATAATCGACTCAAGTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA
mRNA sequence
ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA
Coding sequence (CDS)
ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA
Protein sequence
MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFSHSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNLVLEETTTSTEDHVSSPDN
Homology
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match:
A0A5A7SN79 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00190 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 93/117 (79.49%), Postives = 93/117 (79.49%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP
Sbjct: 114 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP------------- 173
Query: 61 HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 118
EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL
Sbjct: 174 -----------EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 206
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match:
A0A5D3DC52 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00430 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 89/205 (43.41%), Postives = 106/205 (51.71%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH-GTNPRPF 60
MAPS K ATT KGK YKGIPT+HP+KKIRRSV A +EGQQSL+ P+RSTH G +P P
Sbjct: 66 MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125
Query: 61 S----------------------------------------------------------- 120
S
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHRKAG 185
Query: 121 -----------HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDY 135
SP RVASP KEV S++ DHG TS+A DSP+AS+PID E+ SDDT+EDY
Sbjct: 186 NSTYPKPTQVPRSPPRVASPLKEVLSQTMDHGTTSIAPDSPKASLPIDAEEASDDTNEDY 245
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match:
A0A5D3C7L1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001600 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.5e-26
Identity = 81/143 (56.64%), Postives = 94/143 (65.73%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
M S K TTKGK YKGI T+HP+KKIRRSVAA++ Q SLL PVR + T F
Sbjct: 1 MPASPSKTMATTKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFD 60
Query: 61 -----HSPSRVASPPKEVPSRSTDHGMTSVALD---SPQASIPIDKEDTSDDTDEDYVSV 120
HSPS VASP K+VPSR+TDHG +S SPQ S+P D ++ SDD DEDYV V
Sbjct: 61 SSDVLHSPSWVASPRKDVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 120
Query: 121 NEDNLVLEETTTSTEDHVSSPDN 136
++ LEET TSTED VSSPDN
Sbjct: 121 TKETHALEETMTSTEDLVSSPDN 143
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match:
A0A5A7UK00 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00310 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0
Query: 3 PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
P +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL PVRSTH
Sbjct: 647 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 706
Query: 63 ------------------------------------------------------GTNPRP 122
G + P
Sbjct: 707 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 766
Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 135
SP SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 767 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 826
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match:
A0A5D3C212 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00470 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0
Query: 3 PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
P +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL PVRSTH
Sbjct: 645 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 704
Query: 63 ------------------------------------------------------GTNPRP 122
G + P
Sbjct: 705 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 764
Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 135
SP SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 765 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 824
BLAST of IVF0024373 vs. NCBI nr
Match:
KAA0032634.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 169 bits (428), Expect = 2.23e-48
Identity = 93/117 (79.49%), Postives = 93/117 (79.49%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP
Sbjct: 114 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP------------- 173
Query: 61 HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 117
EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL
Sbjct: 174 -----------EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 206
BLAST of IVF0024373 vs. NCBI nr
Match:
KAA0068158.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 129 bits (325), Expect = 9.01e-34
Identity = 89/205 (43.41%), Postives = 106/205 (51.71%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH-GTNPRPF 60
MAPS K ATT KGK YKGIPT+HP+KKIRRSV A +EGQQSL+ P+RSTH G +P P
Sbjct: 66 MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125
Query: 61 S----------------------------------------------------------- 120
S
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHRKAG 185
Query: 121 -----------HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDY 134
SP RVASP KEV S++ DHG TS+A DSP+AS+PID E+ SDDT+EDY
Sbjct: 186 NSTYPKPTQVPRSPPRVASPLKEVLSQTMDHGTTSIAPDSPKASLPIDAEEASDDTNEDY 245
BLAST of IVF0024373 vs. NCBI nr
Match:
KAA0058484.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 128 bits (322), Expect = 4.41e-32
Identity = 81/143 (56.64%), Postives = 94/143 (65.73%), Query Frame = 0
Query: 1 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
M S K TTKGK YKGI T+HP+KKIRRSVAA++ Q SLL PVR + T F
Sbjct: 1 MPASPSKTMATTKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFD 60
Query: 61 -----HSPSRVASPPKEVPSRSTDHGMTSVALD---SPQASIPIDKEDTSDDTDEDYVSV 120
HSPS VASP K+VPSR+TDHG +S SPQ S+P D ++ SDD DEDYV V
Sbjct: 61 SSDVLHSPSWVASPRKDVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 120
Query: 121 NEDNLVLEETTTSTEDHVSSPDN 135
++ LEET TSTED VSSPDN
Sbjct: 121 TKETHALEETMTSTEDLVSSPDN 143
BLAST of IVF0024373 vs. NCBI nr
Match:
TYK05238.1 (F5J5.1 [Cucumis melo var. makuwa])
HSP 1 Score: 120 bits (300), Expect = 2.20e-28
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0
Query: 3 PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
P +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL PVRSTH
Sbjct: 645 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 704
Query: 63 ------------------------------------------------------GTNPRP 122
G + P
Sbjct: 705 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 764
Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 134
SP SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 765 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 824
BLAST of IVF0024373 vs. NCBI nr
Match:
KAA0056263.1 (F5J5.1 [Cucumis melo var. makuwa])
HSP 1 Score: 120 bits (300), Expect = 2.20e-28
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0
Query: 3 PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
P +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL PVRSTH
Sbjct: 647 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 706
Query: 63 ------------------------------------------------------GTNPRP 122
G + P
Sbjct: 707 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 766
Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 134
SP SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 767 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 826
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SN79 | 4.4e-39 | 79.49 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3DC52 | 1.1e-26 | 43.41 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3C7L1 | 2.5e-26 | 56.64 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7UK00 | 1.2e-23 | 40.87 | F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00310 PE=4 SV... | [more] |
A0A5D3C212 | 1.2e-23 | 40.87 | F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00470 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
KAA0032634.1 | 2.23e-48 | 79.49 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0068158.1 | 9.01e-34 | 43.41 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculat... | [more] |
KAA0058484.1 | 4.41e-32 | 56.64 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculat... | [more] |
TYK05238.1 | 2.20e-28 | 40.87 | F5J5.1 [Cucumis melo var. makuwa] | [more] |
KAA0056263.1 | 2.20e-28 | 40.87 | F5J5.1 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |