IVF0024373 (gene) Melon (IVF77) v1

Overview
NameIVF0024373
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionFlocculation protein FLO11-like
Locationchr08: 28768782 .. 28769414 (+)
RNA-Seq ExpressionIVF0024373
SyntenyIVF0024373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTGTCTCTCTTGTCACTGTAAAAAGGGAAGTCCCTGAAAGTTCTCCACCACGTACGTTTCACCATCTACATCCTTTTCTGTGCTGAGACCTCGAGGTTCAGTTGAGATAGTGGTGTTAGATTCGAACTCTTCTGATAGTGAAGACAATGTAGTTCTGTCGGCCATTCTTCATCGTAAGACTAGACATCCCACTGATCCATCACCTACTCCTCCATAATCGACTCAAGTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA

mRNA sequence

ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA

Coding sequence (CDS)

ATGGCTCCCTCCCTACGAAAACATGCAACAACCACAAAGGGTAAATGGTACAAAGGTATACCAACAAAACATCCGTACAAGAAAATTCGCCGATCAGTAGCAGCTTCTGAGGAAGGTCAACAGAGTTTGTTACCGCGGCCGGTTCGTAGTACGCATGGGACGAACCCCAGACCCTTTTCTCACTCTCCATCTCGGGTTGCTTCACCTCCTAAGGAGGTTCCATCTCGATCTACGGATCATGGTATGACTTCCGTTGCTCTTGATTCTCCACAAGCATCTATTCCAATTGATAAAGAAGACACTAGTGACGATACTGATGAAGACTATGTTTCTGTCAATGAAGACAATCTTGTACTCGAGGAAACCACGACATCTACTGAGGACCATGTCTCTTCTCCTGATAATTAA

Protein sequence

MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFSHSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNLVLEETTTSTEDHVSSPDN
Homology
BLAST of IVF0024373 vs. ExPASy TrEMBL
Match: A0A5A7SN79 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00190 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 93/117 (79.49%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
           MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP             
Sbjct: 114 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP------------- 173

Query: 61  HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 118
                      EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL
Sbjct: 174 -----------EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 206

BLAST of IVF0024373 vs. ExPASy TrEMBL
Match: A0A5D3DC52 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00430 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 89/205 (43.41%), Postives = 106/205 (51.71%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH-GTNPRPF 60
           MAPS  K ATT KGK YKGIPT+HP+KKIRRSV A +EGQQSL+  P+RSTH G +P P 
Sbjct: 66  MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125

Query: 61  S----------------------------------------------------------- 120
           S                                                           
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHRKAG 185

Query: 121 -----------HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDY 135
                       SP RVASP KEV S++ DHG TS+A DSP+AS+PID E+ SDDT+EDY
Sbjct: 186 NSTYPKPTQVPRSPPRVASPLKEVLSQTMDHGTTSIAPDSPKASLPIDAEEASDDTNEDY 245

BLAST of IVF0024373 vs. ExPASy TrEMBL
Match: A0A5D3C7L1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.5e-26
Identity = 81/143 (56.64%), Postives = 94/143 (65.73%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
           M  S  K   TTKGK YKGI T+HP+KKIRRSVAA++  Q SLL  PVR +  T    F 
Sbjct: 1   MPASPSKTMATTKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFD 60

Query: 61  -----HSPSRVASPPKEVPSRSTDHGMTSVALD---SPQASIPIDKEDTSDDTDEDYVSV 120
                HSPS VASP K+VPSR+TDHG +S       SPQ S+P D ++ SDD DEDYV V
Sbjct: 61  SSDVLHSPSWVASPRKDVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 120

Query: 121 NEDNLVLEETTTSTEDHVSSPDN 136
            ++   LEET TSTED VSSPDN
Sbjct: 121 TKETHALEETMTSTEDLVSSPDN 143

BLAST of IVF0024373 vs. ExPASy TrEMBL
Match: A0A5A7UK00 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00310 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0

Query: 3   PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
           P  +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL  PVRSTH          
Sbjct: 647 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 706

Query: 63  ------------------------------------------------------GTNPRP 122
                                                                 G +  P
Sbjct: 707 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 766

Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 135
              SP            SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 767 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 826

BLAST of IVF0024373 vs. ExPASy TrEMBL
Match: A0A5D3C212 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0

Query: 3   PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
           P  +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL  PVRSTH          
Sbjct: 645 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 704

Query: 63  ------------------------------------------------------GTNPRP 122
                                                                 G +  P
Sbjct: 705 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 764

Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 135
              SP            SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 765 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 824

BLAST of IVF0024373 vs. NCBI nr
Match: KAA0032634.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 2.23e-48
Identity = 93/117 (79.49%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
           MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP             
Sbjct: 114 MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRP------------- 173

Query: 61  HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 117
                      EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL
Sbjct: 174 -----------EVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDYVSVNEDNL 206

BLAST of IVF0024373 vs. NCBI nr
Match: KAA0068158.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 9.01e-34
Identity = 89/205 (43.41%), Postives = 106/205 (51.71%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH-GTNPRPF 60
           MAPS  K ATT KGK YKGIPT+HP+KKIRRSV A +EGQQSL+  P+RSTH G +P P 
Sbjct: 66  MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125

Query: 61  S----------------------------------------------------------- 120
           S                                                           
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHRKAG 185

Query: 121 -----------HSPSRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTDEDY 134
                       SP RVASP KEV S++ DHG TS+A DSP+AS+PID E+ SDDT+EDY
Sbjct: 186 NSTYPKPTQVPRSPPRVASPLKEVLSQTMDHGTTSIAPDSPKASLPIDAEEASDDTNEDY 245

BLAST of IVF0024373 vs. NCBI nr
Match: KAA0058484.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 4.41e-32
Identity = 81/143 (56.64%), Postives = 94/143 (65.73%), Query Frame = 0

Query: 1   MAPSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTHGTNPRPFS 60
           M  S  K   TTKGK YKGI T+HP+KKIRRSVAA++  Q SLL  PVR +  T    F 
Sbjct: 1   MPASPSKTMATTKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFD 60

Query: 61  -----HSPSRVASPPKEVPSRSTDHGMTSVALD---SPQASIPIDKEDTSDDTDEDYVSV 120
                HSPS VASP K+VPSR+TDHG +S       SPQ S+P D ++ SDD DEDYV V
Sbjct: 61  SSDVLHSPSWVASPRKDVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 120

Query: 121 NEDNLVLEETTTSTEDHVSSPDN 135
            ++   LEET TSTED VSSPDN
Sbjct: 121 TKETHALEETMTSTEDLVSSPDN 143

BLAST of IVF0024373 vs. NCBI nr
Match: TYK05238.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 2.20e-28
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0

Query: 3   PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
           P  +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL  PVRSTH          
Sbjct: 645 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 704

Query: 63  ------------------------------------------------------GTNPRP 122
                                                                 G +  P
Sbjct: 705 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 764

Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 134
              SP            SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 765 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 824

BLAST of IVF0024373 vs. NCBI nr
Match: KAA0056263.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 2.20e-28
Identity = 85/208 (40.87%), Postives = 103/208 (49.52%), Query Frame = 0

Query: 3   PSLRKHATTTKGKWYKGIPTKHPYKKIRRSVAASEEGQQSLLPRPVRSTH---------- 62
           P  +K+ATTTKGK YKGIPTKH Y+KIRRSVA S+EG QSLL  PVRSTH          
Sbjct: 647 PHHQKNATTTKGKHYKGIPTKHSYEKIRRSVATSKEGHQSLLTSPVRSTHSRRSLDPVSP 706

Query: 63  ------------------------------------------------------GTNPRP 122
                                                                 G +  P
Sbjct: 707 VPIKKEVPKSSPPCTFHLSASSFVPRTRGSIEIVVLDSDFSDSKDNVVLSTLLQGKDGHP 766

Query: 123 FSHSP------------SRVASPPKEVPSRSTDHGMTSVALDSPQASIPIDKEDTSDDTD 134
              SP            SRVASPPKEV SR+T+HG +S A DSP A++P D+E+ S+DTD
Sbjct: 767 TDSSPTPLKPTQVSCSRSRVASPPKEVLSRTTNHGTSSAAPDSPHATLPTDEEEASEDTD 826

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SN794.4e-3979.49Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DC521.1e-2643.41Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3C7L12.5e-2656.64Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UK001.2e-2340.87F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00310 PE=4 SV... [more]
A0A5D3C2121.2e-2340.87F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00470 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAA0032634.12.23e-4879.49flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0068158.19.01e-3443.41flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculat... [more]
KAA0058484.14.41e-3256.64flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculat... [more]
TYK05238.12.20e-2840.87F5J5.1 [Cucumis melo var. makuwa][more]
KAA0056263.12.20e-2840.87F5J5.1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024373.1IVF0024373.1mRNA