IVF0024055 (gene) Melon (IVF77) v1

Overview
NameIVF0024055
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
Locationchr12: 22887604 .. 22889825 (+)
RNA-Seq ExpressionIVF0024055
SyntenyIVF0024055
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCAACTGCTATTGTTCAATTCTGTTACTCGTTTGTTTGTAGTTTCTGACTGCCCTAAATTTGCATTGGTTTTTTTCAAGTTTTCCATTGACATTGTAGCTAACTGCATCTTGGGGTTTCCCCAATTTTCTTCTCCTTGATGTTGCAGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCATGATTTAATGTTCTTCATCAAAATAGGGTTCTCTTGGTGTTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTATTAATAGCAGATTTAAGCTTTGCATTTCAGATTGATATACATATTTTAACTACAATGCAGAGATAGAGTTGAGAATGGATTCTATTTACTATAGTGACCGTTGGCTTATTTTTGAATTCAATAGTGCCTTAACAAAAATAAGGAAGTAAATCCTTGGCTGAGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGCGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATACACGGACCTTCTACACTTTAACTTTAACAATGATCAAAAGGTAGAGGATCTATCCAGCAGAAAATTGAAAGCTTGTAGACAATGAAGCTCAAACAGTTCTTTTTTTTCTTTTTCTAACCAAATGTCTGCATTAGACTTGGATCGGACATGGATAAATCTGGACACCTTAGACACGTGTCCGACATGCTAAAAGAAGTGTTGGGATTTTTTTCTTCTAATATAGAAAATATTAACTCACAAAATAGGGAGAAAAATGGAGATTCTCTTATAGTTTGAATCCTTATATATTGATCAATCCTAATGTAATAGAATGACATCATATCCTCTAGTTATAGCCAACTAAATCTCTATATCGTAAAATTTCATACATCGATAATCAACTTAACTTGTGTATGTTTCTAGTGAAGTATATTTTGCATGGATGTTAATTTAAATGTATTTATCTATAAAGAAGTGTTAATATATCATACACACATATTTTATATTTAAAAGAAGTGTATCCCAAATATATTTGTGTCCAATTATTTCAGAAATTGACGTGTTGTTATATCCACGTCGTATCATGTTCGTGTATTTCTTAGTTTGTAAATTTATTCGATGCAAAATCAAGAAGTTCAATTGTTAATTTCACATACCGATCAAGTAGAACTTGGAAAGTTTACGACCTACATCTACCCTTTTTGGATTTCACATAAAAATTTGGAGCCTTACACTTAAAAGGAGAGTAAGCTTATGGCTTATAAAACAAATGCATTCATGATTATGACAGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAATCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCGATCTGACTAAACTCATTTTCAGCCGCATTTATTTTAGCCATCTATAAAAGAATGTTCAACTTCATTATTATTCATCTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACTTATGCTTAGCTCTA

mRNA sequence

AATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAATCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCGATCTGACTAAACTCATTTTCAGCCGCATTTATTTTAGCCATCTATAAAAGAATGTTCAACTTCATTATTATTCATCTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACTTATGCTTAGCTCTA

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Protein sequence

MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Homology
BLAST of IVF0024055 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.5e-65
Identity = 128/186 (68.82%), Postives = 157/186 (84.41%), Query Frame = 0

Query: 48  LSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 107
           L  L+SFAL+I+LTS  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 108 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEV 167
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  ++EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 168 D-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 227
           + G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 228 TFDSMD 233
           TF+SM+
Sbjct: 223 TFESME 225

BLAST of IVF0024055 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 3.9e-128
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of IVF0024055 vs. ExPASy TrEMBL
Match: A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 3.9e-128
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of IVF0024055 vs. ExPASy TrEMBL
Match: A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of IVF0024055 vs. ExPASy TrEMBL
Match: A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 197/237 (83.12%), Postives = 212/237 (89.45%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
           MSSL FRP LVSPWKK   NNN NQ+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLHFRPALVSPWKK---NNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60

Query: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+ P GLENGKI PCPS NPSCVSTNPK
Sbjct: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPK 120

Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
           SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180

Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of IVF0024055 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.4e-103
Identity = 197/237 (83.12%), Postives = 212/237 (89.45%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
           MSSL FRP LVSPWKKK  N   NQ+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLHFRPALVSPWKKKKKN---NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60

Query: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
           SSSFAF L+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180

Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of IVF0024055 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 465 bits (1196), Expect = 3.95e-165
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of IVF0024055 vs. NCBI nr
Match: XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])

HSP 1 Score: 446 bits (1147), Expect = 1.13e-157
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKDNNN KNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNN-KNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of IVF0024055 vs. NCBI nr
Match: XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 429 bits (1102), Expect = 7.58e-151
Identity = 217/233 (93.13%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKK     KNQYHSP S PSM+ALQN NHKPIFLSH+LSFALSITL
Sbjct: 1   MSSLQFRPPLVSPWKKKKK---KNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITL 60

Query: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  SSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230

BLAST of IVF0024055 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386 bits (991), Expect = 7.20e-134
Identity = 198/237 (83.54%), Postives = 214/237 (90.30%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
           MSSL FRP LVSPWKKK NNN   Q+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLHFRPALVSPWKKKKNNN---QFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60

Query: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
           SSSFAFPL+IP++++GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180

Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of IVF0024055 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385 bits (989), Expect = 1.45e-133
Identity = 198/237 (83.54%), Postives = 213/237 (89.87%), Query Frame = 0

Query: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
           MSSL FRP LVSPWKKK NNN   Q+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLHFRPALVSPWKKKSNNN---QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFAL 60

Query: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPK
Sbjct: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPK 120

Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
           SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180

Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of IVF0024055 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 249.2 bits (635), Expect = 3.2e-66
Identity = 128/186 (68.82%), Postives = 157/186 (84.41%), Query Frame = 0

Query: 48  LSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 107
           L  L+SFAL+I+LTS  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 108 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEV 167
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  ++EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 168 D-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 227
           + G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 228 TFDSMD 233
           TF+SM+
Sbjct: 223 TFESME 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SW334.5e-6568.82Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
A0A5A7UK023.9e-128100.00Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3AZP33.9e-128100.00thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0LRK91.9e-12296.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1[more]
A0A6J1K5811.1e-10383.12thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... [more]
A0A6J1GT704.4e-10383.12thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
XP_008439847.13.95e-165100.00PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... [more]
XP_004154123.11.13e-15796.14thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... [more]
XP_038893869.17.58e-15193.13thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida][more]
KAG7012320.17.20e-13483.54Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
XP_023542750.11.45e-13383.54thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... [more]
Match NameE-valueIdentityDescription
AT4G24930.13.2e-6668.82thylakoid lumenal 17.9 kDa protein, chloroplast [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTICcoord: 22..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024055.2IVF0024055.2mRNA