Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCAACTGCTATTGTTCAATTCTGTTACTCGTTTGTTTGTAGTTTCTGACTGCCCTAAATTTGCATTGGTTTTTTTCAAGTTTTCCATTGACATTGTAGCTAACTGCATCTTGGGGTTTCCCCAATTTTCTTCTCCTTGATGTTGCAGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCATGATTTAATGTTCTTCATCAAAATAGGGTTCTCTTGGTGTTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTATTAATAGCAGATTTAAGCTTTGCATTTCAGATTGATATACATATTTTAACTACAATGCAGAGATAGAGTTGAGAATGGATTCTATTTACTATAGTGACCGTTGGCTTATTTTTGAATTCAATAGTGCCTTAACAAAAATAAGGAAGTAAATCCTTGGCTGAGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGCGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATACACGGACCTTCTACACTTTAACTTTAACAATGATCAAAAGGTAGAGGATCTATCCAGCAGAAAATTGAAAGCTTGTAGACAATGAAGCTCAAACAGTTCTTTTTTTTCTTTTTCTAACCAAATGTCTGCATTAGACTTGGATCGGACATGGATAAATCTGGACACCTTAGACACGTGTCCGACATGCTAAAAGAAGTGTTGGGATTTTTTTCTTCTAATATAGAAAATATTAACTCACAAAATAGGGAGAAAAATGGAGATTCTCTTATAGTTTGAATCCTTATATATTGATCAATCCTAATGTAATAGAATGACATCATATCCTCTAGTTATAGCCAACTAAATCTCTATATCGTAAAATTTCATACATCGATAATCAACTTAACTTGTGTATGTTTCTAGTGAAGTATATTTTGCATGGATGTTAATTTAAATGTATTTATCTATAAAGAAGTGTTAATATATCATACACACATATTTTATATTTAAAAGAAGTGTATCCCAAATATATTTGTGTCCAATTATTTCAGAAATTGACGTGTTGTTATATCCACGTCGTATCATGTTCGTGTATTTCTTAGTTTGTAAATTTATTCGATGCAAAATCAAGAAGTTCAATTGTTAATTTCACATACCGATCAAGTAGAACTTGGAAAGTTTACGACCTACATCTACCCTTTTTGGATTTCACATAAAAATTTGGAGCCTTACACTTAAAAGGAGAGTAAGCTTATGGCTTATAAAACAAATGCATTCATGATTATGACAGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAATCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCGATCTGACTAAACTCATTTTCAGCCGCATTTATTTTAGCCATCTATAAAAGAATGTTCAACTTCATTATTATTCATCTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACTTATGCTTAGCTCTA
mRNA sequence
AATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAATCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCGATCTGACTAAACTCATTTTCAGCCGCATTTATTTTAGCCATCTATAAAAGAATGTTCAACTTCATTATTATTCATCTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACTTATGCTTAGCTCTA
Coding sequence (CDS)
ATGAGTTCGCTCCAATTTCGCCCTCTACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCTTCCATGTCCGCTCTTCAAAATGTAAATCACAAGCCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTAACCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGAACCTACCAACCGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGATGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGTCGAGATGTGATTGAGTTTCTGGTGAAAGGAGATGTGGCCGCATACAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA
Protein sequence
MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Homology
BLAST of IVF0024055 vs. ExPASy Swiss-Prot
Match:
Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 4.5e-65
Identity = 128/186 (68.82%), Postives = 157/186 (84.41%), Query Frame = 0
Query: 48 LSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 107
L L+SFAL+I+LTS P++AIPSL+S S PL TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43 LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102
Query: 108 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEV 167
P CVSTNP SSSF+FPL IP+ + +PI+KL+EAI+ TQ+NPK ++EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162
Query: 168 D-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 227
+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222
Query: 228 TFDSMD 233
TF+SM+
Sbjct: 223 TFESME 225
BLAST of IVF0024055 vs. ExPASy TrEMBL
Match:
A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)
HSP 1 Score: 467.2 bits (1201), Expect = 3.9e-128
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of IVF0024055 vs. ExPASy TrEMBL
Match:
A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)
HSP 1 Score: 467.2 bits (1201), Expect = 3.9e-128
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of IVF0024055 vs. ExPASy TrEMBL
Match:
A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)
HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61 SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
+GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of IVF0024055 vs. ExPASy TrEMBL
Match:
A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)
HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 197/237 (83.12%), Postives = 212/237 (89.45%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
MSSL FRP LVSPWKK NNN NQ+ S V S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1 MSSLHFRPALVSPWKK---NNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
Query: 61 SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+ P GLENGKI PCPS NPSCVSTNPK
Sbjct: 61 SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPK 120
Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of IVF0024055 vs. ExPASy TrEMBL
Match:
A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 384.0 bits (985), Expect = 4.4e-103
Identity = 197/237 (83.12%), Postives = 212/237 (89.45%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
MSSL FRP LVSPWKKK N NQ+ S V S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1 MSSLHFRPALVSPWKKKKKN---NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
Query: 61 SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61 SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120
Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
SSSFAF L+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 234
EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of IVF0024055 vs. NCBI nr
Match:
XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 465 bits (1196), Expect = 3.95e-165
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of IVF0024055 vs. NCBI nr
Match:
XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])
HSP 1 Score: 446 bits (1147), Expect = 1.13e-157
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKKDNNN KNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNN-KNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61 SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
+GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of IVF0024055 vs. NCBI nr
Match:
XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])
HSP 1 Score: 429 bits (1102), Expect = 7.58e-151
Identity = 217/233 (93.13%), Postives = 224/233 (96.14%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKK KNQYHSP S PSM+ALQN NHKPIFLSH+LSFALSITL
Sbjct: 1 MSSLQFRPPLVSPWKKKKK---KNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITL 60
Query: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 SSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230
BLAST of IVF0024055 vs. NCBI nr
Match:
KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 386 bits (991), Expect = 7.20e-134
Identity = 198/237 (83.54%), Postives = 214/237 (90.30%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
MSSL FRP LVSPWKKK NNN Q+ S V S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1 MSSLHFRPALVSPWKKKKNNN---QFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
Query: 61 SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61 SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120
Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
SSSFAFPL+IP++++GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of IVF0024055 vs. NCBI nr
Match:
XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 385 bits (989), Expect = 1.45e-133
Identity = 198/237 (83.54%), Postives = 213/237 (89.87%), Query Frame = 0
Query: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
MSSL FRP LVSPWKKK NNN Q+ S V S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1 MSSLHFRPALVSPWKKKSNNN---QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFAL 60
Query: 61 SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPK
Sbjct: 61 SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPK 120
Query: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
Query: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of IVF0024055 vs. TAIR 10
Match:
AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )
HSP 1 Score: 249.2 bits (635), Expect = 3.2e-66
Identity = 128/186 (68.82%), Postives = 157/186 (84.41%), Query Frame = 0
Query: 48 LSHLLSFALSITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 107
L L+SFAL+I+LTS P++AIPSL+S S PL TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43 LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102
Query: 108 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEV 167
P CVSTNP SSSF+FPL IP+ + +PI+KL+EAI+ TQ+NPK ++EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162
Query: 168 D-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 227
+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222
Query: 228 TFDSMD 233
TF+SM+
Sbjct: 223 TFESME 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SW33 | 4.5e-65 | 68.82 | Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UK02 | 3.9e-128 | 100.00 | Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3AZP3 | 3.9e-128 | 100.00 | thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... | [more] |
A0A0A0LRK9 | 1.9e-122 | 96.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1 | [more] |
A0A6J1K581 | 1.1e-103 | 83.12 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... | [more] |
A0A6J1GT70 | 4.4e-103 | 83.12 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... | [more] |
Match Name | E-value | Identity | Description | |
XP_008439847.1 | 3.95e-165 | 100.00 | PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... | [more] |
XP_004154123.1 | 1.13e-157 | 96.14 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... | [more] |
XP_038893869.1 | 7.58e-151 | 93.13 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida] | [more] |
KAG7012320.1 | 7.20e-134 | 83.54 | Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
XP_023542750.1 | 1.45e-133 | 83.54 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... | [more] |
Match Name | E-value | Identity | Description | |
AT4G24930.1 | 3.2e-66 | 68.82 | thylakoid lumenal 17.9 kDa protein, chloroplast | [more] |