IVF0023925 (gene) Melon (IVF77) v1

Overview
NameIVF0023925
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr02: 14478260 .. 14478529 (-)
RNA-Seq ExpressionIVF0023925
SyntenyIVF0023925
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACATGTATTTCCTACGCATTATGCATGGCGTCGGGGCCAACGTCGAGAATAAAGATCATTCCCGATGTTATTATGGTGCATCAGCAAAGCTCCATCGTAAATTAGGACAAATTAATTATGGCGGTGGCATGTATCCCCGACACTATGCTTTATGCATCAGAGATGACAACGGGAATAAGGATCATTCCCGATGCTATTATGGTGTGTCGGGAAAGGTGGAGCATTCTCGACATCTTCGTGATACGTCGGGAGATCCCTTATAA

mRNA sequence

ATGGCAGACATGTATTTCCTACGCATTATGCATGGCGTCGGGGCCAACGTCGAGAATAAAGATCATTCCCGATGTTATTATGGTGCATCAGCAAAGCTCCATCGTAAATTAGGACAAATTAATTATGGCGGTGGCATGTATCCCCGACACTATGCTTTATGCATCAGAGATGACAACGGGAATAAGGATCATTCCCGATGCTATTATGGTGTGTCGGGAAAGGTGGAGCATTCTCGACATCTTCGTGATACGTCGGGAGATCCCTTATAA

Coding sequence (CDS)

ATGGCAGACATGTATTTCCTACGCATTATGCATGGCGTCGGGGCCAACGTCGAGAATAAAGATCATTCCCGATGTTATTATGGTGCATCAGCAAAGCTCCATCGTAAATTAGGACAAATTAATTATGGCGGTGGCATGTATCCCCGACACTATGCTTTATGCATCAGAGATGACAACGGGAATAAGGATCATTCCCGATGCTATTATGGTGTGTCGGGAAAGGTGGAGCATTCTCGACATCTTCGTGATACGTCGGGAGATCCCTTATAA

Protein sequence

MADMYFLRIMHGVGANVENKDHSRCYYGASAKLHRKLGQINYGGGMYPRHYALCIRDDNGNKDHSRCYYGVSGKVEHSRHLRDTSGDPL
Homology
BLAST of IVF0023925 vs. ExPASy TrEMBL
Match: A0A5A7TXR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00280 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-14
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 46 MYPRHYALCIRDDNGNKDHSRCYYGVSGKVEHSRHLRDTSG 87
          MYPR YALCIRDDNGNKDHSRCYYGVSGKVEHSR LRDT G
Sbjct: 1  MYPRRYALCIRDDNGNKDHSRCYYGVSGKVEHSRRLRDTYG 41

BLAST of IVF0023925 vs. ExPASy TrEMBL
Match: A0A5D3BXD7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00020 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 0

Query: 45 GMYPRHYALCIRDDNGNKDHSRCYYGVSG 74
          GMYPR YALC+RDD GNKDHSR  YG SG
Sbjct: 24 GMYPRRYALCVRDDVGNKDHSRLCYGASG 52

BLAST of IVF0023925 vs. NCBI nr
Match: KAA0046746.1 (uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.46e-20
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 46 MYPRHYALCIRDDNGNKDHSRCYYGVSGKVEHSRHLRDTSG 86
          MYPR YALCIRDDNGNKDHSRCYYGVSGKVEHSR LRDT G
Sbjct: 1  MYPRRYALCIRDDNGNKDHSRCYYGVSGKVEHSRRLRDTYG 41

BLAST of IVF0023925 vs. NCBI nr
Match: KAA0052779.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04177.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 5.93e-07
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 0

Query: 45 GMYPRHYALCIRDDNGNKDHSRCYYGVSG 73
          GMYPR YALC+RDD GNKDHSR  YG SG
Sbjct: 24 GMYPRRYALCVRDDVGNKDHSRLCYGASG 52

BLAST of IVF0023925 vs. NCBI nr
Match: KAA0026134.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK11594.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 7.08e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1  MADMYFLRIMHGVGANVENKDHSRCYYGASAKLHR 35
          MADMY   IMHG+ A+VENK HSR YYGASAK  R
Sbjct: 1  MADMYSRCIMHGIEASVENKGHSRRYYGASAKPRR 35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TXR15.5e-1492.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BXD71.8e-0479.31CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0046746.16.46e-2092.68uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa][more]
KAA0052779.15.93e-0779.31CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04177.1 CACTA en-... [more]
KAA0026134.17.08e-0571.43CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK11594.1 CACTA en-... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023925.1IVF0023925.1mRNA