IVF0023854 (gene) Melon (IVF77) v1

Overview
NameIVF0023854
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionExosome complex component RRP4-like protein
Locationchr02: 22993471 .. 22997966 (+)
RNA-Seq ExpressionIVF0023854
SyntenyIVF0023854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTCTACAGATTTTCTTGAATCATACCCAACAGACTCGCCTTAAGAATGCCCAAAAACGCTCGAGTCTCTCTCATCAAAGGCTAATTATGATGCTTCAGTTGCAGTTGGTGATACTGTTCCTTTCAGTTACGAGGATGGCGTTCTCAAGTATATAATTTCTGACTATCCTTATATAATAAAAGTTTGGATTGTTGTGTACTTGCCGGGGGATTATATGCATTGAAGTATAACTGAAATTTGTATGCAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTACCACTATTTGTGGAGTAGTTGAGCGAGTCAATAAGCTTATCTATGTACGTTCCCTACGTGCCAGGTTGTCCGTGAAATCTTGTAATTTGGTTTATCTGGATGATAGCTTAATGTTTTCCTTTCTTTTTTGTATTGTTATTATATCTTTTCTGATGTAATTGTCTATACTGGATAGTAGATATAAACCAGAGATTGGTGATATCGTGGTGGGACGTGTTACAGAGGTAAAGCTAAACGCTTTTTATTAGTTTTTTTAGTTTTATGAAAATATAATATATAGACAATGGTGAGTAAAATAGGCAGGATAATTTTATTTGGGAGTCACGGTTAAGATGTGGTATATAGGAAAAATGTGTTAGAGTGCTCCCCACCATCCCTTTTTTTTTTTCTTATCATTTGATGGGATCTTATTCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTACAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTAGAGAATTCCCTTTCGTTATGGAAATAATGGTGCATACCATTGCACAGAGCGTGAATTATTGATGCCTTCTGTTTAACTTTACAGAAAATTTAGCTGAAAAATTGATTCAACTGATCCTCCTCCTCTTCTTCCTTTTTTCTTTTCTAAAGAGTGGTTGCATTTGTTGTAACTATGGATTAATTGTATTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGTAAGTTTTATAGTTTTCAATTTTTGAAGAATTAGACTTTTGAACTTCTGAAGCGTTGCCTGAAGATATTTGCCTATTGATCTCTCAATCTCTGTACAATGATTAAAGCCTAAATTTACCCTGCACTAGTCTATAATAAATAAACACCACTCTCAACTCTCATCAGTAATTGTTCCTGCATAATTTTCCATTTTAAAAAAATAACATCACCACGTCCTTTCTCAGGCAGAAGTACGTGGTTTTCAGCATGATGGACTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAGAAAATCTCGTTTTTAAGCTCCTACATGTTGATGTAAAGACAGCATCAGTTTTTAAATCAATTTTTGTGTGACGCACAATATTAGAGGGTACCTATACTGATAGGATACCTTTGATGCACTGGTTATTGGTTATCATGTGTTCCTAACAACTTTTCTGGCATCATCTCATCTTGTTTCTTTATGACTTGTGAATAAAATTTGTGTATTTGTATCCAGCTTGAACGTGGTCAACTTCTAACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTCGGATGCAATGGGTTTATCTGGATCGGGAAGCATGTTGATTCTACACAGGACACGATGATAGAAGATCAAGTTAATAAAATTGAACAAAAGGGTTCAAAATTTGAAGGAAACTTTGGCAACCAAATGCACGAAAGAGTACATACTCCATTAGAGACACGGCAGAATATATGCAGAACTGCAAATGCTATTCGAGTGTTGTCTATCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTATTTCTCTGAACATCAATGTACATGAAATGCTCGGTTCGGAGTTCTTTGTCCTTGTGGCAGAAAAAGAGGTTGAACGACGAAGTTGCAGAAAGAAGAGAGGGTGATTTGGTTTTCTGTCAATAATGTGTGTAATTTGAACCACTCCTAATGAAAATTTTGCTACGAACCGTTTGATTTGCAGAGGAATTTAGTACTAGAATATTTTGTAGAATTTTAGATTACGACCACTTGGTCTGTGTACACATCAGTGAAGAATGCAACATTTACTTAATTATTCTCTGTAGTATGTGTTTCACAAATGTCTTTGAATTACTTTAGGATTTTTACATATATATATATATAGATTTATATAGATTAGTACTTCACGTAACATAACTTTATCAAACGTGGTAATGCTGGTAACGGTATCTTGTGATCTTGAGGTGGCCAAAAGAGGACCATCTTCTGATAGTGTTATGGAAAAAAGAAAATGAAGAGAAATCGCTTGCTATTGTCCCCGAAGGGCTGCAAAAAAGTTCACCGGATCAATCTCGAGAATCTGATATTCCTCTAGATTTATATGACATTGCATACAAGAAATTTTGGCACACAAATTCCATGAAAAATGGGCGTAGAAGGTATATATGGAGGTAAAAGTGGGAAATAGACGCTCATTTTTGTGCTGCTGCTCTTGTTCAACTAATAGACATCCTATTTTAAAATGTGTGTTTGATTTTAGTCAAATTTCTGTATTTGATTGAGAGTTGAAAGATATAGAAGACTAAGTACTCTGTTTAGTTAAGTTACTACCACTGTACTTGTATATTGTATTATAGAAATTGGTAAAGGAGGAAAAGGCAACATCTTCATGGCGAAGAAAAGTAGAAATGAAAATTGACTTTTATAGGAACCTTTCAATGAAGTATTTTATTTCATTTAATTTGTTTTGTTTTGCTGCTTTTTTCTGTCTGGAAAATTTAAAATAGATGAGGGAAGAAAAGAAACGAAAACTTTGAAGGTGTATCTTACTTTGTGACCTGACTTTTGGGATTGAAAATGCATAATTCATTGTGAAAGAAAGGGAAGGGGGCTGTGTTTGATTTTCTTGCTCATTCACCAAAGTCCCACTCCCACTTAAGAAGAGCTTTATGTGTCATCTTTCCACTCAACCAAATTAGCTTCCCTTCTTCCTTAATTACAATTACAACACCCAACCCCACTCACATCCATTTCTCCAAAAATCCAAAACCAAACCCAACCTTCGAAGAAAACTTACACTAAAAAAAACAACAAAAATGAAAAATTTTGAAGCATAACATCGAGTTGAGTAAAATTCCATTCAGACACTAAGTAGTAATGTTAAAAGATAATAATACTAATAACAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTATGGGTGGTAGTAGTAATTATTAAAGTAAAAGAATGGCGTCCCGTCGACCACCATTTTGGTTATTAAAATGAAAGGGAGAAAGAAAAAGTGTGCTTTATCTCTTTACTCACAATCCTAGTGTTAGTGTTATATGTGTATGTGTATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGAAGAAGTAAGAAATAGGAAATAGGAATGATGAGAAGATTGCCACCTGGGTTTCGGTTTGAGCCAACAGAAGAAGAGCTTGTGTTTGAGTATCTAAAATGCAAGGTCTTTTCCTCGGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTGCTGCAGGTAAAATTAATTTATGGTTTATGAATACTTGAATTTGTATATGGCTTTAATTAATATAATTAAAATTAAAAGATGTATGTTATTGGAATTGGTTGTAGGTGGTGGGGACGAAGAGAAATACTTATTCAGCAAGAAGGAGGCAGAGGAATATAACAATAACAATAATGGAGAAGGAGGAATAATTGGATGGAGTAAGAGTGGATACTGGAAGGCAAGAGGAAGGGAGAAGGAAATAGTAAGCAGTGAGAATGGAGTGGCATTAATGGGTATGAAGAGCACTCTGGATTTCTACACCAACAACATCAGGAAGATGAAAAAGACAGGTTGGGTGATGCATCAGTATCGTCTCATAATACCACATTCTCACTCTTCGACTAACAAATGGGTTCTTTGCCACATCCTTTCTCCTACTAATAAATTATTCGATCATATTATTCACCCCCACCGCCACCGCCGCCGCCTCCGTTATTCTATTTCTTCTACAAAGGATGAGAATGGGGATGATCAGGATGAGCATGATGAGCATGTAAATCACATCACTACTTCCACCGCCTTCTCCGACGACGAACATGATTCTGTTTCCTCCACCGCCTCATCCTCTTCCACTTCCGCCACCTTCACCGATTTCACATCTACAACTACTGCTACTACTACATTCCACTTATAATTAATTATTCATTATTGTTCCCATATTTCGTCTCTTCTTATAATTATATCATATGCATGCTCAGATATATATATATATATCTATATATATATATATATATATCCTTTCCTTTTTCC

mRNA sequence

ATGAGAGGTCTACAGATTTTCTTGAATCATACCCAACAGACTCGCCTTAAGAATGCTAATTATGATGCTTCAGTTGCAGTTGGTGATACTGTTCCTTTCAGTTACGAGGATGGCGTTCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTACCACTATTTGTGGAGTAGTTGAGCGAGTCAATAAGCTTATCTATGTACGTTCCCTACGTGCCAGATATAAACCAGAGATTGGTGATATCGTGGTGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTACAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTACGTGGTTTTCAGCATGATGGACTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAACTTCTAACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTCGGATGCAATGGGTTTATCTGGATCGGGAAGAAACTTTGGCAACCAAATGCACGAAAGAGTACATACTCCATTAGAGACACGGCAGAATATATGCAGAACTGCAAATGCTATTCGAGTGTTGTCTATCTTAGTATTTCTCTGAACATCAATGTACATGAAATGCTCGGTTCGGAGTTCTTTGTCCTTGTGGCAGAAAAAGAGGAAATAGGAATGATGAGAAGATTGCCACCTGGGTTTCGGTTTGAGCCAACAGAAGAAGAGCTTGTGTTTGAGTATCTAAAATGCAAGGTCTTTTCCTCGGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTGCTGCAGGTGGTGGGGACGAAGAGAAATACTTATTCAGCAAGAAGGAGGCAGAGGAATATAACAATAACAATAATGGAGAAGGAGGAATAATTGGATGGAGTAAGAGTGGATACTGGAAGGCAAGAGGAAGGGAGAAGGAAATAGTAAGCAGTGAGAATGGAGTGGCATTAATGGGTATGAAGAGCACTCTGGATTTCTACACCAACAACATCAGGAAGATGAAAAAGACAGGTTGGGTGATGCATCAGTATCGTCTCATAATACCACATTCTCACTCTTCGACTAACAAATGGGTTCTTTGCCACATCCTTTCTCCTACTAATAAATTATTCGATCATATTATTCACCCCCACCGCCACCGCCGCCGCCTCCGTTATTCTATTTCTTCTACAAAGGATGAGAATGGGGATGATCAGGATGAGCATGATGAGCATGTAAATCACATCACTACTTCCACCGCCTTCTCCGACGACGAACATGATTCTGTTTCCTCCACCGCCTCATCCTCTTCCACTTCCGCCACCTTCACCGATTTCACATCTACAACTACTGCTACTACTACATTCCACTTATAATTAATTATTCATTATTGTTCCCATATTTCGTCTCTTCTTATAATTATATCATATGCATGCTCAGATATATATATATATATCTATATATATATATATATATATCCTTTCCTTTTTCC

Coding sequence (CDS)

ATGAGAGGTCTACAGATTTTCTTGAATCATACCCAACAGACTCGCCTTAAGAATGCTAATTATGATGCTTCAGTTGCAGTTGGTGATACTGTTCCTTTCAGTTACGAGGATGGCGTTCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTACCACTATTTGTGGAGTAGTTGAGCGAGTCAATAAGCTTATCTATGTACGTTCCCTACGTGCCAGATATAAACCAGAGATTGGTGATATCGTGGTGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTACAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTACGTGGTTTTCAGCATGATGGACTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAACTTCTAACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTCGGATGCAATGGGTTTATCTGGATCGGGAAGAAACTTTGGCAACCAAATGCACGAAAGAGTACATACTCCATTAGAGACACGGCAGAATATATGCAGAACTGCAAATGCTATTCGAGTGTTGTCTATCTTAGTATTTCTCTGAACATCAATGTACATGAAATGCTCGGTTCGGAGTTCTTTGTCCTTGTGGCAGAAAAAGAGGAAATAGGAATGATGAGAAGATTGCCACCTGGGTTTCGGTTTGAGCCAACAGAAGAAGAGCTTGTGTTTGAGTATCTAAAATGCAAGGTCTTTTCCTCGGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTGCTGCAGGTGGTGGGGACGAAGAGAAATACTTATTCAGCAAGAAGGAGGCAGAGGAATATAACAATAACAATAATGGAGAAGGAGGAATAATTGGATGGAGTAAGAGTGGATACTGGAAGGCAAGAGGAAGGGAGAAGGAAATAGTAAGCAGTGAGAATGGAGTGGCATTAATGGGTATGAAGAGCACTCTGGATTTCTACACCAACAACATCAGGAAGATGAAAAAGACAGGTTGGGTGATGCATCAGTATCGTCTCATAATACCACATTCTCACTCTTCGACTAACAAATGGGTTCTTTGCCACATCCTTTCTCCTACTAATAAATTATTCGATCATATTATTCACCCCCACCGCCACCGCCGCCGCCTCCGTTATTCTATTTCTTCTACAAAGGATGAGAATGGGGATGATCAGGATGAGCATGATGAGCATGTAAATCACATCACTACTTCCACCGCCTTCTCCGACGACGAACATGATTCTGTTTCCTCCACCGCCTCATCCTCTTCCACTTCCGCCACCTTCACCGATTTCACATCTACAACTACTGCTACTACTACATTCCACTTATAA

Protein sequence

MRGLQIFLNHTQQTRLKNANYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKKLWQPNARKSTYSIRDTAEYMQNCKCYSSVVYLSISLNINVHEMLGSEFFVLVAEKEEIGMMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTFHL
Homology
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BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.7e-85
Identity = 168/310 (54.19%), Postives = 216/310 (69.68%), Query Frame = 0 

Query: 1   MRGLQIFLNHTQQTRLK-----------NANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQ+ R +           +AN DASV V D++P +++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120
           GE++ T+CGVVERV+KL+YVR+LRARYKPE+GDIVVGRV EVA KRWR++++++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK--KLWQPNA------------ 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+G+  ++  P A            
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMISS 242

Query: 241 --------------RKSTYSIRDTAEYMQN------CKCYSSVVYLSISLNINVHEMLGS 265
                         R++   I +    + N       +     V LS S NI++H+MLGS
Sbjct: 243 SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGS 302

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BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.7e-44
Identity = 96/182 (52.75%), Postives = 126/182 (69.23%), Query Frame = 0 

Query: 25  VAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIV 84
           V  GDT+  + + G ++GHGT     +++ ++ G VERVNKLI V++L+ RY  E+GDIV
Sbjct: 27  VVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIV 86

Query: 85  VGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAE 144
           VGR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AE
Sbjct: 87  VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 146

Query: 145 VRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFI 204
           V+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG NGFI
Sbjct: 147 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 205

Query: 205 WI 206
           WI
Sbjct: 207 WI 205

[Close]
BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.4e-44
Identity = 95/182 (52.20%), Postives = 126/182 (69.23%), Query Frame = 0 

Query: 25  VAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIV 84
           V  GDT+  + + G ++GHGT     +++ ++ G VERVNKLI V++L+ RY  E+GDIV
Sbjct: 27  VVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIV 86

Query: 85  VGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAE 144
           VGR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AE
Sbjct: 87  VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 146

Query: 145 VRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFI 204
           V+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG NGFI
Sbjct: 147 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 205

Query: 205 WI 206
           W+
Sbjct: 207 WV 205

[Close]
BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.4e-44
Identity = 86/169 (50.89%), Postives = 119/169 (70.41%), Query Frame = 0 

Query: 40  LKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLD 99
           ++GHGT   +G +  ++ G V+RVNKLI V+ LR++Y PEIGD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 100 IHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQAR 159
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 160 SQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK 208
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ K
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSK 238

[Close]
BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-43
Identity = 96/182 (52.75%), Postives = 126/182 (69.23%), Query Frame = 0 

Query: 25  VAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIV 84
           V  GDT+  + + G ++GHGT     +++ ++ G VERVNKLI V++L+ RY  E+GDIV
Sbjct: 27  VVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIV 86

Query: 85  VGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAE 144
           VGR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AE
Sbjct: 87  VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 146

Query: 145 VRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFI 204
           V+    DG + L  RS KYGKL +G L+ VSP LVKR+K HFH L   G  +ILG NGFI
Sbjct: 147 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 205

Query: 205 WI 206
           WI
Sbjct: 207 WI 205

[Close]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match: A0A5D3BF59 (Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00280 PE=4 SV=1)

HSP 1 Score: 825.5 bits (2131), Expect = 1.2e-235
Identity = 433/510 (84.90%), Postives = 441/510 (86.47%), Query Frame = 0 

Query: 12  QQTRLKN-----------ANYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVV 71
           +QTRLKN           ANYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVV
Sbjct: 74  RQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVV 133

Query: 72  ERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ 131
           ERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ
Sbjct: 134 ERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ 193

Query: 132 RRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKR 191
           RRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKR
Sbjct: 194 RRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKR 253

Query: 192 RKQHFHHLEQYGIDLILGCNGFIWIGKKLWQPNARKSTYSIRDTAEYMQNCKCYSSVVYL 251
           RKQHFHHLEQYGIDLILGCNGFIWIGK +          S +DT    Q  K        
Sbjct: 254 RKQHFHHLEQYGIDLILGCNGFIWIGKHV---------DSTQDTMIEDQVNKIEQKGSKF 313

Query: 252 SISLNINVHEMLGSEFFVLVAEKEEIGMMRRLPPGFRFEPTEEELVFEYLKCKVFSSALP 311
             +    +HE + +              +R L         EEELVFEYLKCKVFSSALP
Sbjct: 314 EGNFGNQMHERVHTPLETRQNICRTANAIRVL------SILEEELVFEYLKCKVFSSALP 373

Query: 312 ASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKA 371
           ASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKA
Sbjct: 374 ASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKA 433

Query: 372 RGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLC 431
           RGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLC
Sbjct: 434 RGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLC 493

Query: 432 HILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHD 491
           HILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHD
Sbjct: 494 HILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHD 553

Query: 492 SVSSTASSSSTSATFTDFTSTTTATTTFHL 511
           SVSSTASSSSTSATFTDFTSTTTATTTFHL
Sbjct: 554 SVSSTASSSSTSATFTDFTSTTTATTTFHL 568

[Close]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match: A0A0A0LR52 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G000770 PE=4 SV=1)

HSP 1 Score: 694.5 bits (1791), Expect = 3.3e-196
Identity = 360/406 (88.67%), Postives = 370/406 (91.13%), Query Frame = 0 

Query: 109 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 168
           MLSSMNLPDG QRRRTAVDELN+                  HD LHLQARSQKYGKLERG
Sbjct: 1   MLSSMNLPDGFQRRRTAVDELNI------------------HDELHLQARSQKYGKLERG 60

Query: 169 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK-KLWQPNARKSTYSIRDTAEY 228
           QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIG   LWQPNARKSTYSIRDTAEY
Sbjct: 61  QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGSMNLWQPNARKSTYSIRDTAEY 120

Query: 229 MQNCKCYSSVVYLSISLNINVHEMLGSEFFVLVAEKE---EIGMMRRLPPGFRFEPTEEE 288
           MQNCKCYSSVV+LSISLNI+VHEMLGSEFFVL+AEKE   EIGMMR LPPGFRFEPTEEE
Sbjct: 121 MQNCKCYSSVVFLSISLNIDVHEMLGSEFFVLMAEKEGDLEIGMMRGLPPGFRFEPTEEE 180

Query: 289 LVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNN 348
           LVFEYLKCKVFSSALPASIIPEINGVW+LDPWDIPAAGGGDEEKYLFS KEAEE+NNNNN
Sbjct: 181 LVFEYLKCKVFSSALPASIIPEINGVWSLDPWDIPAAGGGDEEKYLFS-KEAEEHNNNNN 240

Query: 349 GE-GGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQY 408
           GE GGIIGWSKSGYWKARGREKEIVS+ENGVALMGMK+TLDFYTNNIRKMKKTGWVMHQY
Sbjct: 241 GEGGGIIGWSKSGYWKARGREKEIVSNENGVALMGMKNTLDFYTNNIRKMKKTGWVMHQY 300

Query: 409 RLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDE 468
           RLIIPHSHSSTNKWVLCHILSPTNKLF HI+HPHRHRRRL  SISSTKD NGD +DEHDE
Sbjct: 301 RLIIPHSHSSTNKWVLCHILSPTNKLFSHIVHPHRHRRRLHCSISSTKDVNGDHEDEHDE 360

Query: 469 HVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTFH 510
           HVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTST T TTTFH
Sbjct: 361 HVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTAT-TTTFH 386

[Close]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match: A0A1S3CLH3 (NAC domain-containing protein 83-like OS=Cucumis melo OX=3656 GN=LOC103502292 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-133
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 

Query: 268 MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE 327
           MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE
Sbjct: 1   MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE 60

Query: 328 KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT 387
           KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT
Sbjct: 61  KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT 120

Query: 388 NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI 447
           NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI
Sbjct: 121 NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI 180

Query: 448 SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT 507
           SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT
Sbjct: 181 SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT 240

Query: 508 FHL 511
           FHL
Sbjct: 241 FHL 243

[Close]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match: A0A5A7USS6 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00280 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 3.4e-132
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0 

Query: 269 MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK 328
           MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK
Sbjct: 1   MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK 60

Query: 329 YLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN 388
           YLFSKKEA EYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN
Sbjct: 61  YLFSKKEAGEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN 120

Query: 389 NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS 448
           NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS
Sbjct: 121 NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS 180

Query: 449 STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF 508
           STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF
Sbjct: 181 STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF 240

Query: 509 HL 511
           HL
Sbjct: 241 HL 242

[Close]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match: A0A1S3CLC6 (exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.0e-120
Identity = 239/316 (75.63%), Postives = 248/316 (78.48%), Query Frame = 0 

Query: 1   MRGLQIFLNHTQQTRLKN-----------ANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60
           MRGLQIFLNHTQQTRLKN           ANYDASVAVGDTVPFSYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120
           GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK---------------KLWQPNA 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK               K+ Q  +
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 241 R-------KSTYSIRDTAEYMQN-CKCYSSV------------------VYLSISLNINV 265
           +       +    +    E  QN C+  +++                  V LSISLNINV
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

[Close]
BLAST of IVF0023854 vs. NCBI nr
Match: TYJ98430.1 (exosome complex component RRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 822 bits (2122), Expect = 5.23e-296
Identity = 436/518 (84.17%), Postives = 444/518 (85.71%), Query Frame = 0 

Query: 6   IFLNHTQ--QTRLKNA-----------NYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEV 65
           IFL   +  QTRLKNA           NYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEV
Sbjct: 66  IFLQRLKKRQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLNGEV 125

Query: 66  VTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSS 125
           VTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSS
Sbjct: 126 VTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSS 185

Query: 126 MNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLT 185
           MNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLT
Sbjct: 186 MNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLT 245

Query: 186 VSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKKLWQPNARKSTYSIRDTAEYMQNCK 245
           VSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK +          S +DT    Q  K
Sbjct: 246 VSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHV---------DSTQDTMIEDQVNK 305

Query: 246 CYSSVVYLSISLNINVHEMLGSEFFVLVAEKEEIGMMRRLPPGFRFEPTEEELVFEYLKC 305
                     +    +HE + +              +R L         EEELVFEYLKC
Sbjct: 306 IEQKGSKFEGNFGNQMHERVHTPLETRQNICRTANAIRVL------SILEEELVFEYLKC 365

Query: 306 KVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGW 365
           KVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGW
Sbjct: 366 KVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNGEGGIIGW 425

Query: 366 SKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHS 425
           SKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHS
Sbjct: 426 SKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRLIIPHSHS 485

Query: 426 STNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTST 485
           STNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTST
Sbjct: 486 STNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSISSTKDENGDDQDEHDEHVNHITTST 545

Query: 486 AFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTFHL 510
           AFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTFHL
Sbjct: 546 AFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTFHL 568

[Close]
BLAST of IVF0023854 vs. NCBI nr
Match: XP_008464389.1 (PREDICTED: NAC domain-containing protein 83-like [Cucumis melo])

HSP 1 Score: 483 bits (1244), Expect = 1.08e-167
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 

Query: 268 MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE 327
           MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE
Sbjct: 1   MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE 60

Query: 328 KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT 387
           KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT
Sbjct: 61  KYLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT 120

Query: 388 NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI 447
           NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI
Sbjct: 121 NNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSI 180

Query: 448 SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT 507
           SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT
Sbjct: 181 SSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTT 240

Query: 508 FHL 510
           FHL
Sbjct: 241 FHL 243

[Close]
BLAST of IVF0023854 vs. NCBI nr
Match: KAA0057747.1 (NAC domain-containing protein 83-like [Cucumis melo var. makuwa])

HSP 1 Score: 479 bits (1232), Expect = 6.94e-166
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0 

Query: 269 MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK 328
           MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK
Sbjct: 1   MRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEK 60

Query: 329 YLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN 388
           YLFSKKEA EYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN
Sbjct: 61  YLFSKKEAGEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN 120

Query: 389 NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS 448
           NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS
Sbjct: 121 NIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS 180

Query: 449 STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF 508
           STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF
Sbjct: 181 STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATTTF 240

Query: 509 HL 510
           HL
Sbjct: 241 HL 242

[Close]
BLAST of IVF0023854 vs. NCBI nr
Match: XP_004138030.1 (NAC domain-containing protein 83 isoform X2 [Cucumis sativus] >KAE8652374.1 hypothetical protein Csa_014231 [Cucumis sativus])

HSP 1 Score: 439 bits (1130), Expect = 2.10e-150
Identity = 227/243 (93.42%), Postives = 233/243 (95.88%), Query Frame = 0 

Query: 268 MMRRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEE 327
           MMR LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVW+LDPWDIPAAGGGDEE
Sbjct: 1   MMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWSLDPWDIPAAGGGDEE 60

Query: 328 KYLFSKKEAEEYNNNNNGEGG-IIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFY 387
           KYLFSK EAEE+NNNNNGEGG IIGWSKSGYWKARGREKEIVS+ENGVALMGMK+TLDFY
Sbjct: 61  KYLFSK-EAEEHNNNNNGEGGGIIGWSKSGYWKARGREKEIVSNENGVALMGMKNTLDFY 120

Query: 388 TNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYS 447
           TNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLF HI+HPHRHRRRL  S
Sbjct: 121 TNNIRKMKKTGWVMHQYRLIIPHSHSSTNKWVLCHILSPTNKLFSHIVHPHRHRRRLHCS 180

Query: 448 ISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTTTATT 507
           ISSTKD NGD +DEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTST T TT
Sbjct: 181 ISSTKDVNGDHEDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDFTSTAT-TT 240

Query: 508 TFH 509
           TFH
Sbjct: 241 TFH 241

[Close]
BLAST of IVF0023854 vs. NCBI nr
Match: XP_008464390.1 (PREDICTED: exosome complex component RRP4 homolog [Cucumis melo])

HSP 1 Score: 442 bits (1137), Expect = 3.84e-150
Identity = 239/316 (75.63%), Postives = 248/316 (78.48%), Query Frame = 0 

Query: 1   MRGLQIFLNHTQQTRLKNA-----------NYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60
           MRGLQIFLNHTQQTRLKNA           NYDASVAVGDTVPFSYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120
           GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK---------------KLWQPNA 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK               K+ Q  +
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 241 R-------KSTYSIRDTAEYMQN-CKCYSSV------------------VYLSISLNINV 264
           +       +    +    E  QN C+  +++                  V LSISLNINV
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

[Close]
BLAST of IVF0023854 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 318.2 bits (814), Expect = 1.2e-86
Identity = 168/310 (54.19%), Postives = 216/310 (69.68%), Query Frame = 0 

Query: 1   MRGLQIFLNHTQQTRLK-----------NANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQ+ R +           +AN DASV V D++P +++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120
           GE++ T+CGVVERV+KL+YVR+LRARYKPE+GDIVVGRV EVA KRWR++++++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGK--KLWQPNA------------ 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+G+  ++  P A            
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMISS 242

Query: 241 --------------RKSTYSIRDTAEYMQN------CKCYSSVVYLSISLNINVHEMLGS 265
                         R++   I +    + N       +     V LS S NI++H+MLGS
Sbjct: 243 SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGS 302

[Close]
BLAST of IVF0023854 vs. TAIR 10
Match: AT5G13180.1 (NAC domain containing protein 83 )

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-28
Identity = 86/230 (37.39%), Postives = 116/230 (50.43%), Query Frame = 0 

Query: 271 RLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYL 330
           RLPPGFRF PT+EELV +YLK KV SS LPASIIPE + V   DPWD+P  G  ++E+Y 
Sbjct: 13  RLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFD-VCRADPWDLP--GNLEKERYF 72

Query: 331 FSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNI 390
           FS +EA+  N N +        + SGYWKA G +K +V+S  G  ++G+K TL FY    
Sbjct: 73  FSTREAKYPNGNRSNRA-----TGSGYWKATGIDKRVVTS-RGNQIVGLKKTLVFYKGKP 132

Query: 391 RKMKKTGWVMHQYRLII--PHSHSSTNKWVLCHILSPTNKLFDHIIHPHRHRRRLRYSIS 450
               +T W+MH+YRL    P S   T  WVLC I                        + 
Sbjct: 133 PHGSRTDWIMHEYRLSSSPPSSMGPTQNWVLCRIF-----------------------LK 192

Query: 451 STKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSATFTDF 499
                  DD D    ++ H   +   S D+ + +++  +   T   F DF
Sbjct: 193 KRAGNKNDDDDGDSRNLRHNNNNN--SSDQIEIITTDQTDDKTKPIFFDF 208

[Close]
BLAST of IVF0023854 vs. TAIR 10
Match: AT2G33480.2 (NAC domain containing protein 41 )

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-27
Identity = 69/153 (45.10%), Postives = 90/153 (58.82%), Query Frame = 0 

Query: 271 RLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYL 330
           RLPPGFRF PT+EELV +YL+ KV    LPAS+IPE + V   DPWD+P  G  + E Y 
Sbjct: 14  RLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETD-VCKSDPWDLP--GDCESEMYF 73

Query: 331 FSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNI 390
           FS +EA+  N N +        + SGYWKA G +K+I   +    ++GMK TL FY    
Sbjct: 74  FSTREAKYPNGNRSNRS-----TGSGYWKATGLDKQIGKKK---LVVGMKKTLVFYKGKP 133

Query: 391 RKMKKTGWVMHQYRLIIPHSHSSTN-KWVLCHI 423
               +T WV+H+YRL+     S  N  WVLC +
Sbjct: 134 PNGTRTNWVLHEYRLVDSQQDSLYNMNWVLCRV 155

[Close]
BLAST of IVF0023854 vs. TAIR 10
Match: AT2G33480.1 (NAC domain containing protein 41 )

HSP 1 Score: 119.4 bits (298), Expect = 8.4e-27
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 0 

Query: 271 RLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYL 330
           RLPPGFRF PT+EELV +YL+ KV    LPAS+IPE + V   DPWD+P  G  + E Y 
Sbjct: 14  RLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETD-VCKSDPWDLP--GDCESEMYF 73

Query: 331 FSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTNNI 390
           FS +EA+  N N +        + SGYWKA G +K+I   +    ++GMK TL FY    
Sbjct: 74  FSTREAKYPNGNRSNRS-----TGSGYWKATGLDKQIGKKK---LVVGMKKTLVFYKGKP 133

Query: 391 RKMKKTGWVMHQYRLIIPHSHS---STNKWVLCHI 423
               +T WV+H+YRL+     S       WVLC +
Sbjct: 134 PNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRV 157

[Close]
BLAST of IVF0023854 vs. TAIR 10
Match: AT1G76420.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-24
Identity = 67/179 (37.43%), Postives = 95/179 (53.07%), Query Frame = 0 

Query: 270 RRLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIP-AAGGGDEEK 329
           R LPPGFRF PT+EEL+  YL  K+F   L    I E++ +   +PW++P  A  G+ E 
Sbjct: 20  RGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVD-LNRCEPWELPEMAKMGEREW 79

Query: 330 YLFSKKEAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYTN 389
           Y +S ++ +               + +GYWKA G++KE+ S   G  L+GMK TL FY  
Sbjct: 80  YFYSLRDRKYPTGLRTNRA-----TTAGYWKATGKDKEVFSGGGG-QLVGMKKTLVFYKG 139

Query: 390 NIRKMKKTGWVMHQYRLIIPHSHSSTNK--WVLCHILSPTNK------LFDHIIHPHRH 440
              +  KT WVMH+YRL   HSH  T K  WV+C + + T        + + I + H H
Sbjct: 140 RAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRKNVGLIHNQISYLHNH 191

The following BLAST results are available for this feature:
BLAST of IVF0023854 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVT71.7e-8554.19Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
Q8VBV35.7e-4452.75Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
Q2KID07.4e-4452.20Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
Q097047.4e-4450.89Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
Q138681.3e-4352.75Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
BLAST of IVF0023854 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BF591.2e-23584.90Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LR523.3e-19688.67NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G000770 PE=4 SV... [more]
A0A1S3CLH31.4e-133100.00NAC domain-containing protein 83-like OS=Cucumis melo OX=3656 GN=LOC103502292 PE... [more]
A0A5A7USS63.4e-13299.59NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3CLC61.0e-12075.63exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 P... [more]
BLAST of IVF0023854 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98430.15.23e-29684.17exosome complex component RRP4-like protein [Cucumis melo var. makuwa][more]
XP_008464389.11.08e-167100.00PREDICTED: NAC domain-containing protein 83-like [Cucumis melo][more]
KAA0057747.16.94e-16699.59NAC domain-containing protein 83-like [Cucumis melo var. makuwa][more]
XP_004138030.12.10e-15093.42NAC domain-containing protein 83 isoform X2 [Cucumis sativus] >KAE8652374.1 hypo... [more]
XP_008464390.13.84e-15075.63PREDICTED: exosome complex component RRP4 homolog [Cucumis melo][more]
BLAST of IVF0023854 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03360.11.2e-8654.19ribosomal RNA processing 4 [more]
AT5G13180.14.5e-2837.39NAC domain containing protein 83 [more]
AT2G33480.21.7e-2745.10NAC domain containing protein 41 [more]
AT2G33480.18.4e-2743.87NAC domain containing protein 41 [more]
AT1G76420.12.3e-2437.43NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 79..158
e-value: 4.3E-4
score: 29.6
IPR003441NAC domainPFAMPF02365NAMcoord: 273..405
e-value: 2.5E-26
score: 93.1
IPR003441NAC domainPROSITEPS51005NACcoord: 272..425
score: 40.301746
IPR036093NAC domain superfamilyGENE3D2.170.150.80NAC domaincoord: 281..429
e-value: 4.6E-32
score: 112.9
IPR036093NAC domain superfamilySUPERFAMILY101941NAC domaincoord: 267..423
NoneNo IPR availableGENE3D2.40.50.100coord: 25..76
e-value: 2.0E-16
score: 61.2
NoneNo IPR availableGENE3D2.40.50.140coord: 77..166
e-value: 2.4E-18
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..495
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 16..264
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 75..165
e-value: 8.63265E-33
score: 118.036
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 26..74
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 168..208
e-value: 3.6E-12
score: 46.5
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 16..264
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 168..261
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 74..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023854.1IVF0023854.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding