IVF0023799 (gene) Melon (IVF77) v1

Overview


Name	IVF0023799
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit 9, mitochondrial
Location	chr06: 171557 .. 171748 (-)
RNA-Seq Expression	IVF0023799
Synteny	IVF0023799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGAAGGTGCAAAATCAATAGGAGCCGGAGCTGCTACAATTGCTTCAGCGGGAGTTGCTGTCAGTATTGGAAACGTCTTCAATTCTTTAATCCATTTCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCAATTTTGGGCTTTGCTTTAACTGAAGCTACTGCATTGTTGCTCTAA

mRNA sequence

ATGTTAGAAGGTGCAAAATCAATAGGAGCCGGAGCTGCTACAATTGCTTCAGCGGGAGTTGCTGTCAGTATTGGAAACGTCTTCAATTCTTTAATCCATTTCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCAATTTTGGGCTTTGCTTTAACTGAAGCTACTGCATTGTTGCTCTAA

Coding sequence (CDS)

ATGTTAGAAGGTGCAAAATCAATAGGAGCCGGAGCTGCTACAATTGCTTCAGCGGGAGTTGCTGTCAGTATTGGAAACGTCTTCAATTCTTTAATCCATTTCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCAATTTTGGGCTTTGCTTTAACTGAAGCTACTGCATTGTTGCTCTAA

Protein sequence

MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATALLL

Homology

[Close]

BLAST of IVF0023799 vs. ExPASy Swiss-Prot
Match: P60113 (ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-21
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy Swiss-Prot
Match: Q37550 (ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-20
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

[Close]

BLAST of IVF0023799 vs. ExPASy Swiss-Prot
Match: P69420 (ATP synthase subunit 9, mitochondrial OS=Pisum sativum OX=3888 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQ FGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy Swiss-Prot
Match: P69421 (ATP synthase subunit 9, mitochondrial OS=Glycine max OX=3847 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQ FGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy Swiss-Prot
Match: P69422 (ATP synthase subunit 9, mitochondrial OS=Vicia faba OX=3906 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQ FGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy TrEMBL
Match: A0A160DQR7 (ATP synthase subunit 9, mitochondrial OS=Allium cepa OX=4679 GN=atp9 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy TrEMBL
Match: A0A7G6KLQ4 (ATP synthase subunit 9, mitochondrial OS=Brassica juncea OX=3707 GN=atp9 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy TrEMBL
Match: J7MD23 (ATP synthase subunit 9, mitochondrial OS=Raphanus sativus OX=3726 GN=atp9 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy TrEMBL
Match: A0A5N6L1B2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025327 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of IVF0023799 vs. ExPASy TrEMBL
Match: A0A650GB85 (ATP-synt_C domain-containing protein OS=Raphanus sativus OX=3726 GN=orf273a PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
           MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 200 MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 259

Query: 61  L 62
           L
Sbjct: 260 L 260

[Close]

BLAST of IVF0023799 vs. NCBI nr
Match: CBI19991.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 102 bits (255), Expect = 6.33e-27
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKS+GAGA TIASAG A+SIGNVF+SLIHFVARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSMGAGATTIASAGAAISIGNVFSSLIHFVARNPSLAKQSFGYAILGFALTEAIA 60

[Close]

BLAST of IVF0023799 vs. NCBI nr
Match: YP_006665983.1 (ATP synthase subunit 9 [Raphanus sativus] >YP_006665994.1 ATP synthase subunit 9 [Raphanus sativus] >QNC68170.1 Atp9 [Brassica juncea] >AGC81716.1 ATPase subunit 9 [Raphanus sativus] >QGW48326.1 ATP synthase subunit 9 [Raphanus sativus] >QNC68187.1 Atp9 [Brassica juncea] >BAM36225.1 ATP synthase subunit 9 [Raphanus sativus])

HSP 1 Score: 102 bits (254), Expect = 8.06e-27
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

[Close]

BLAST of IVF0023799 vs. NCBI nr
Match: WP_131747030.1 (ATP synthase subunit C family protein [Candidatus Frankia meridionalis])

HSP 1 Score: 102 bits (254), Expect = 8.06e-27
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

[Close]

BLAST of IVF0023799 vs. NCBI nr
Match: BBD20369.1 (ATP synthase subunit 9 [Allium cepa])

HSP 1 Score: 102 bits (254), Expect = 1.09e-26
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG AV IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 12 MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 71

[Close]

BLAST of IVF0023799 vs. NCBI nr
Match: BAA02855.2 (F0-ATPase subunit 9 [Brassica napus])

HSP 1 Score: 102 bits (253), Expect = 1.14e-26
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

[Close]

BLAST of IVF0023799 vs. TAIR 10
Match: AT2G07671.1 (ATP synthase subunit C family protein )

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-22
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 12 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 71

Query: 61 L 62
          L
Sbjct: 72 L 72

[Close]

BLAST of IVF0023799 vs. TAIR 10
Match: ATMG01080.1 (mitochondrial F0-ATPase subunit 9 )

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-22
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLAKQSFGYAILGFALTEATA 60
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLAKQSFGYAILGFALTEA A
Sbjct: 12 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 71

Query: 61 L 62
          L
Sbjct: 72 L 72

[Close]

BLAST of IVF0023799 vs. TAIR 10
Match: ATMG00040.1 (ATP synthase subunit C family protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  MLEGAKSIGAGAATIASAGVAVSIGNVFNSLIHFVARNPSLA 43
          MLEGAKSIGAGAATIASAG A+ IGNVF+SLIH VARNPSLA
Sbjct: 12 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLA 53

The following BLAST results are available for this feature:

BLAST of IVF0023799 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60113	5.4e-21	90.16	ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=...	[more]
Q37550	1.2e-20	90.00	ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV...	[more]
P69420	2.1e-20	90.16	ATP synthase subunit 9, mitochondrial OS=Pisum sativum OX=3888 GN=ATP9 PE=3 SV=1	[more]
P69421	2.1e-20	90.16	ATP synthase subunit 9, mitochondrial OS=Glycine max OX=3847 GN=ATP9 PE=3 SV=1	[more]
P69422	2.1e-20	90.16	ATP synthase subunit 9, mitochondrial OS=Vicia faba OX=3906 GN=ATP9 PE=3 SV=1	[more]

BLAST of IVF0023799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A160DQR7	1.5e-18	91.80	ATP synthase subunit 9, mitochondrial OS=Allium cepa OX=4679 GN=atp9 PE=3 SV=1	[more]
A0A7G6KLQ4	1.5e-18	91.80	ATP synthase subunit 9, mitochondrial OS=Brassica juncea OX=3707 GN=atp9 PE=3 SV...	[more]
J7MD23	1.5e-18	91.80	ATP synthase subunit 9, mitochondrial OS=Raphanus sativus OX=3726 GN=atp9 PE=3 S...	[more]
A0A5N6L1B2	1.5e-18	91.80	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025327 PE=3 SV=1	[more]
A0A650GB85	1.5e-18	91.80	ATP-synt_C domain-containing protein OS=Raphanus sativus OX=3726 GN=orf273a PE=3...	[more]

BLAST of IVF0023799 vs. NCBI nr


Match Name	E-value	Identity	Description
CBI19991.3	6.33e-27	90.00	unnamed protein product, partial [Vitis vinifera]	[more]
YP_006665983.1	8.06e-27	91.80	ATP synthase subunit 9 [Raphanus sativus] >YP_006665994.1 ATP synthase subunit 9...	[more]
WP_131747030.1	8.06e-27	91.80	ATP synthase subunit C family protein [Candidatus Frankia meridionalis]	[more]
BBD20369.1	1.09e-26	91.80	ATP synthase subunit 9 [Allium cepa]	[more]
BAA02855.2	1.14e-26	90.16	F0-ATPase subunit 9 [Brassica napus]	[more]

BLAST of IVF0023799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07671.1	3.8e-22	90.16	ATP synthase subunit C family protein	[more]
ATMG01080.1	3.8e-22	90.16	mitochondrial F0-ATPase subunit 9	[more]
ATMG00040.1	1.6e-12	88.10	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 46..63 score: 37.07 coord: 29..44 score: 47.06 coord: 8..27 score: 48.38
IPR000454	ATP synthase, F0 complex, subunit C	PANTHER	PTHR10031	ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..61
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 3..63 e-value: 3.1E-22 score: 80.5
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 8..62 e-value: 6.2E-7 score: 29.6
None	No IPR available	PANTHER	PTHR10031:SF38	ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL	coord: 1..61
None	No IPR available	CDD	cd18182	ATP-synt_Fo_c_ATP5G3	coord: 6..62 e-value: 8.2057E-16 score: 62.1419
IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	PROSITE	PS00605	ATPASE_C	coord: 36..57
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 3..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023799.2	IVF0023799.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015078	proton transmembrane transporter activity