IVF0023755 (gene) Melon (IVF77) v1

Overview
NameIVF0023755
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibosomal protein S12
Locationchr05: 20055857 .. 20056183 (-)
RNA-Seq ExpressionIVF0023755
SyntenyIVF0023755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA

mRNA sequence

ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA

Coding sequence (CDS)

ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA

Protein sequence

MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
Homology
[Close]
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 18  TVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLK 77
           T + SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HN QEHSVVL 
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 78  RGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 125

[Close]
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.9e-32
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 25  KGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKD 84
           +G  +  +STITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 85  LPDVRYHIVRGTLDAVEIKDRQQG 109
           LP VRYHIVRGTLDAV +KDRQQG
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQG 114

[Close]
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: Q85X49 (30S ribosomal protein S12, chloroplastic OS=Pinus koraiensis OX=88728 GN=rps12 PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-31
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 33  TITPKKPNSALRKVARVRLTSGFEITAYIPGIDHNLQEHSVVLVRGGRVKDLPGVRYHIV 92

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDA E+KDRQQG
Sbjct: 93  RGTLDAAEVKDRQQG 107

[Close]
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: P52762 (30S ribosomal protein S12, chloroplastic OS=Pinus thunbergii OX=3350 GN=rps12 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-31
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIDHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDA E+KDRQQG
Sbjct: 99  RGTLDAAEVKDRQQG 113

[Close]
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDAV +KDRQQG
Sbjct: 99  RGTLDAVGVKDRQQG 113

[Close]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 31  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           YIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 91  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 138

[Close]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A0C5G6K8 (Ribosomal protein S12 OS=Ipomoea batatas OX=4120 GN=rps12 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           M SK+LN+E YEVKIS TVL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 1   MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           YIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 108

[Close]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A220NCX4 (Ribosomal protein S12 OS=Cressa cretica OX=1465651 GN=rps12 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           M SK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 32  MNSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 91

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           YIPGI HN QEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 92  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 139

[Close]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A2I6C0D6 (30S ribosomal protein S12, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps12 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 4   KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIP 63
           K+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIP
Sbjct: 39  KELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIP 98

Query: 64  GISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           GI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 99  GIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 143

[Close]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           MTSK+LNKESYEVKIS +VL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 109 MTSKELNKESYEVKISCSVLLSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 168

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 109
           YIPGI HNLQEH VVL RG  VKDLP VRYHIVRGTL A+ +KDRQQG
Sbjct: 169 YIPGIGHNLQEHFVVLVRG-GVKDLPGVRYHIVRGTLYAIGVKDRQQG 215

[Close]
BLAST of IVF0023755 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (462), Expect = 8.20e-57
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 31  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 108
           YIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 91  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 138

[Close]
BLAST of IVF0023755 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 181 bits (460), Expect = 1.65e-56
Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 31  MTSKELNEEPYEVKISRTVLSSGSKGDLSINFSTITPKKPNSALRKVARVRLTSGFEITA 90

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 108
           YIPGI HNLQE+ VVL RGERVKDLP+VRYHIVRGTLDAV +KDRQQG
Sbjct: 91  YIPGIGHNLQEYFVVLVRGERVKDLPNVRYHIVRGTLDAVGVKDRQQG 138

[Close]
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009128437.1 (ribosomal protein S12 [Ipomoea batatas] >YP_009128460.1 ribosomal protein S12 [Ipomoea batatas] >AJP09609.1 ribosomal protein S12 [Ipomoea batatas] >AJP09632.1 ribosomal protein S12 [Ipomoea batatas])

HSP 1 Score: 179 bits (453), Expect = 7.40e-56
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           M SK+LN+E YEVKIS TVL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 1   MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 108
           YIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 108

[Close]
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009409916.1 (ribosomal protein S12 [Cressa cretica] >ASJ65101.1 ribosomal protein S12 [Cressa cretica])

HSP 1 Score: 178 bits (451), Expect = 4.01e-55
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 1   MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITA 60
           M SK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITA
Sbjct: 32  MNSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 91

Query: 61  YIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 108
           YIPGI HN QEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 92  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 139

[Close]
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009456170.1 (ribosomal protein S12 [Lagenaria siceraria] >AUJ21978.1 ribosomal protein S12 [Lagenaria siceraria])

HSP 1 Score: 177 bits (448), Expect = 1.53e-54
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 4   KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIP 63
           K+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIP
Sbjct: 39  KELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIP 98

Query: 64  GISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG 108
           GI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Sbjct: 99  GIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 143

[Close]
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDAV +KDRQQG
Sbjct: 99  RGTLDAVGVKDRQQG 113

[Close]
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDAV +KDRQQG
Sbjct: 99  RGTLDAVGVKDRQQG 113

[Close]
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 34  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIV 93
           TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 94  RGTLDAVEIKDRQQG 109
           RGTLDAV +KDRQQG
Sbjct: 99  RGTLDAVGVKDRQQG 113

[Close]
BLAST of IVF0023755 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0 

Query: 33  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHI 92
           ST TPKKPNS   K+A+VRL++   I A+IPG  HN QEHS VL RG RVKD P V+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 93  VRGTLDAVEIKDRQQG 109
           +RG  D + I  R++G
Sbjct: 98  IRGVKDLMGIPGRRRG 113

[Close]
BLAST of IVF0023755 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0 

Query: 33  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHI 92
           ST TPKKPNS   K+A+VRL++   I A+IPG  HN QEHS VL RG RVKD P V+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 93  VRGTLDAVEIKDRQQG 109
           +RG  D + I  R++G
Sbjct: 98  IRGVKDLMGIPGRRRG 113

The following BLAST results are available for this feature:
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4GYN82.1e-3684.6230S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
A4QJX78.9e-3280.9530S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
Q85X493.4e-3188.0030S ribosomal protein S12, chloroplastic OS=Pinus koraiensis OX=88728 GN=rps12 P... [more]
P527623.4e-3188.0030S ribosomal protein S12, chloroplastic OS=Pinus thunbergii OX=3350 GN=rps12 PE... [more]
A4QJV57.6e-3188.0030S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F0L12.4e-4387.04uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383... [more]
A0A0C5G6K82.6e-4285.19Ribosomal protein S12 OS=Ipomoea batatas OX=4120 GN=rps12 PE=3 SV=1[more]
A0A220NCX44.4e-4285.19Ribosomal protein S12 OS=Cressa cretica OX=1465651 GN=rps12 PE=3 SV=1[more]
A0A2I6C0D69.9e-4286.6730S ribosomal protein S12, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps12... [more]
A0A6A5N1Q82.7e-3983.33Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1[more]
BLAST of IVF0023755 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932068.18.20e-5787.04uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
XP_038902483.11.65e-5686.1130S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
YP_009128437.17.40e-5685.19ribosomal protein S12 [Ipomoea batatas] >YP_009128460.1 ribosomal protein S12 [I... [more]
YP_009409916.14.01e-5585.19ribosomal protein S12 [Cressa cretica] >ASJ65101.1 ribosomal protein S12 [Cressa... [more]
YP_009456170.11.53e-5486.67ribosomal protein S12 [Lagenaria siceraria] >AUJ21978.1 ribosomal protein S12 [L... [more]
BLAST of IVF0023755 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.15.4e-3288.00ribosomal protein S12A [more]
ATCG01230.15.4e-3288.00ribosomal protein S12B [more]
ATCG00905.15.4e-3288.00ribosomal protein S12C [more]
AT2G07675.11.1e-1655.26Ribosomal protein S12/S23 family protein [more]
ATMG00980.11.1e-1655.26Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 53..72
score: 67.01
coord: 72..89
score: 74.69
coord: 37..52
score: 78.99
coord: 89..105
score: 56.21
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 27..106
e-value: 2.1E-24
score: 85.3
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..108
NoneNo IPR availableGENE3D2.40.50.140coord: 1..108
e-value: 1.2E-37
score: 130.4
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 4..108
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 18..108
e-value: 7.9E-38
score: 127.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 28..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023755.2IVF0023755.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome