IVF0023755 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTGTAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG Homology
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36 Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 8.9e-32 Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: Q85X49 (30S ribosomal protein S12, chloroplastic OS=Pinus koraiensis OX=88728 GN=rps12 PE=3 SV=2) HSP 1 Score: 135.6 bits (340), Expect = 3.4e-31 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: P52762 (30S ribosomal protein S12, chloroplastic OS=Pinus thunbergii OX=3350 GN=rps12 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 3.4e-31 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43 Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A0C5G6K8 (Ribosomal protein S12 OS=Ipomoea batatas OX=4120 GN=rps12 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42 Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A220NCX4 (Ribosomal protein S12 OS=Cressa cretica OX=1465651 GN=rps12 PE=3 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42 Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A2I6C0D6 (30S ribosomal protein S12, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps12 PE=3 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42 Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of IVF0023755 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39 Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 0
BLAST of IVF0023755 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 182 bits (462), Expect = 8.20e-57 Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of IVF0023755 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 181 bits (460), Expect = 1.65e-56 Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 0
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009128437.1 (ribosomal protein S12 [Ipomoea batatas] >YP_009128460.1 ribosomal protein S12 [Ipomoea batatas] >AJP09609.1 ribosomal protein S12 [Ipomoea batatas] >AJP09632.1 ribosomal protein S12 [Ipomoea batatas]) HSP 1 Score: 179 bits (453), Expect = 7.40e-56 Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009409916.1 (ribosomal protein S12 [Cressa cretica] >ASJ65101.1 ribosomal protein S12 [Cressa cretica]) HSP 1 Score: 178 bits (451), Expect = 4.01e-55 Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0
BLAST of IVF0023755 vs. NCBI nr
Match: YP_009456170.1 (ribosomal protein S12 [Lagenaria siceraria] >AUJ21978.1 ribosomal protein S12 [Lagenaria siceraria]) HSP 1 Score: 177 bits (448), Expect = 1.53e-54 Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A ) HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B ) HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C ) HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32 Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of IVF0023755 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16 Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0
BLAST of IVF0023755 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16 Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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