IVF0023604 (gene) Melon (IVF77) v1

Overview
NameIVF0023604
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr09: 10184475 .. 10184726 (+)
RNA-Seq ExpressionIVF0023604
SyntenyIVF0023604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGACAACGACTGAAGAGATAGAGATGTGGTTTATTCGTCGTCTTCCATGCCATCGCCGAAAAAATGCTCTCATTCTGACAAGATGTAGATTTGCACCAAATTGTTCGTCGTTTAACGATAATCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGAGCCGTGGTGATTCGACCCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAAGCGTGA

mRNA sequence

ATGAAAAGGACAACGACTGAAGAGATAGAGATGTGGTTTATTCGTCGTCTTCCATGCCATCGCCGAAAAAATGCTCTCATTCTGACAAGATGTAGATTTGCACCAAATTGTTCGTCGTTTAACGATAATCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGAGCCGTGGTGATTCGACCCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAAGCGTGA

Coding sequence (CDS)

ATGAAAAGGACAACGACTGAAGAGATAGAGATGTGGTTTATTCGTCGTCTTCCATGCCATCGCCGAAAAAATGCTCTCATTCTGACAAGATGTAGATTTGCACCAAATTGTTCGTCGTTTAACGATAATCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGAGCCGTGGTGATTCGACCCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAAGCGTGA

Protein sequence

MKRTTTEEIEMWFIRRLPCHRRKNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIESRGDSTLNPKVRLRREGRKA
Homology
BLAST of IVF0023604 vs. ExPASy TrEMBL
Match: A0A5D3BSH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00820 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 22  RKNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIESRGDSTLNPKVRLRREGR 81
           +KN LI T      + SSFN+NRYQSSSITSD TIEEEEKIES GDSTLNPKVRLRREGR
Sbjct: 49  QKNTLIPT------SRSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLRREGR 104

Query: 82  KA 84
           KA
Sbjct: 109 KA 104

BLAST of IVF0023604 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 23  KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIESRGDSTLNPK 74
           KNALI TRC+ AP  SSFNDNRY + SITSDRT EEEEKIES  DSTLNPK
Sbjct: 138 KNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK 188

BLAST of IVF0023604 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 64
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 64
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 64
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. NCBI nr
Match: KAA0039548.1 (uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK01752.1 uncharacterized protein E5676_scaffold775G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.79e-17
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 23  KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIESRGDSTLNPKVRLRREGRK 82
           KN LI T      + SSFN+NRYQSSSITSD TIEEEEKIES GDSTLNPKVRLRREGRK
Sbjct: 50  KNTLIPT------SRSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLRREGRK 104

BLAST of IVF0023604 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.32e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 63
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 7.55e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 63
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 8.83e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 63
          KNALI TRCRF PN SSFNDNRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0023604 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.06e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 23 KNALILTRCRFAPNCSSFNDNRYQSSSITSDRTIEEEEKIE 63
          KNALI TRCRF PN SSFN+NRYQSSSITSDRTIEEEEKIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIE 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BSH63.7e-1277.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPT61.5e-1078.43Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... [more]
A0A5A7UKV82.0e-1092.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V7N32.6e-1092.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWM42.6e-1092.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039548.12.79e-1778.69uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0054315.15.32e-1592.68uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12... [more]
KAA0061741.17.55e-1592.68uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa][more]
KAA0035440.18.83e-1592.68uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa][more]
KAA0039167.13.06e-1490.24uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023604.1IVF0023604.1mRNA