IVF0023106 (gene) Melon (IVF77) v1

Overview


Name	IVF0023106
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	tig00001945: 156486 .. 157040 (+)
RNA-Seq Expression	IVF0023106
Synteny	IVF0023106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGTTCTTCATGCCCTATGGCTATGTTAATCTAACAGACAAGTGTGGTAGCATTGGCCTTCGATCGATTAATATTGTGAGTCTTGTAGATACATGAGAAATTATCAAAAAACGACCGAAGCTTAATTGTGTTGTTCCTACGGTCAATTTGGATAAGGAGAACTCCGATTATTCAATACCAAAATTCGTTCTCTACAAAACTCAATTAGAGCAGGTCTTTTATTATATGGATGAAATCAGAAACGAATAGTCTCAGAGAGATTCAAACAAAACAGTAAGAGATGATGGAAATCCTAAAGAATATAAACCGCAAATAAATCCATCGTTGAGTTCATCCAGCTAAATACAGATATCGCACTCAAATAACAGAATAATTTCTTCGGGTTAAGGGCGATTATTAGCTAGTAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGAAGTGATAAATCCAACGACCGGGGAGGCGATTACACCAGGAGAAGGCTTATTGCAACTTGCGATCGGTGTGGACATTGGTTTGATCTGCGATTAGATGAATAG

mRNA sequence

ATGAAATTGTTCTTCATGCCCTATGGCTATGTTAATCTAACAGACAAGTGTGGTAGCATTGGCCTTCGATCGATTAATATTGAGAACTCCGATTATTCAATACCAAAATTCGTTCTCTACAAAACTCAATTAGAGCAGGTCTTTTATTATATGGATGAAATCAGAAACGAATATAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGAAGTGATAAATCCAACGACCGGGGAGGCGATTACACCAGGAGAAGGCTTATTGCAACTTGCGATCGGTGTGGACATTGGTTTGATCTGCGATTAGATGAATAG

Coding sequence (CDS)

ATGAAATTGTTCTTCATGCCCTATGGCTATGTTAATCTAACAGACAAGTGTGGTAGCATTGGCCTTCGATCGATTAATATTGAGAACTCCGATTATTCAATACCAAAATTCGTTCTCTACAAAACTCAATTAGAGCAGGTCTTTTATTATATGGATGAAATCAGAAACGAATATAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGAAGTGATAAATCCAACGACCGGGGAGGCGATTACACCAGGAGAAGGCTTATTGCAACTTGCGATCGGTGTGGACATTGGTTTGATCTGCGATTAGATGAATAG

Protein sequence

MKLFFMPYGYVNLTDKCGSIGLRSINIENSDYSIPKFVLYKTQLEQVFYYMDEIRNEYKLKFTYLDVEIMLRSDKSNDRGGDYTRRRLIATCDRCGHWFDLRLDE

Homology

[Close]

BLAST of IVF0023106 vs. ExPASy TrEMBL
Match: A0A0A0L482 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019990 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 81/111 (72.97%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 3   LFFMPYGYVNLTDKCGSIGLRSINIENSDYSIPKFVLYKTQLEQVFYYMDEIRN------ 62
           + FMP G VNLTDKCG  GLRSINIENSDYSIPKFV YKTQLEQ+ +  + I +      
Sbjct: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60

Query: 63  -EYKLKFTYLDVEIMLRSDKSNDR-GGDYTRRRLIATCDRCGHWFDLRLDE 106
              KLKFTYLDVEIMLR DKSND  GGDYTRRRLIATCD+CG WFDLRLDE
Sbjct: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDE 111

[Close]

BLAST of IVF0023106 vs. NCBI nr
Match: KGN55859.1 (hypothetical protein Csa_011405 [Cucumis sativus])

HSP 1 Score: 157 bits (396), Expect = 3.40e-47
Identity = 81/111 (72.97%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 3   LFFMPYGYVNLTDKCGSIGLRSINIENSDYSIPKFVLYKTQLEQVFYYMDEIRNE----- 62
           + FMP G VNLTDKCG  GLRSINIENSDYSIPKFV YKTQLEQ+ +  + I +      
Sbjct: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60

Query: 63  --YKLKFTYLDVEIMLRSDKSNDR-GGDYTRRRLIATCDRCGHWFDLRLDE 105
              KLKFTYLDVEIMLR DKSND  GGDYTRRRLIATCD+CG WFDLRLDE
Sbjct: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDE 111

The following BLAST results are available for this feature:

BLAST of IVF0023106 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L482	3.0e-35	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019990 PE=4 SV=1	[more]

BLAST of IVF0023106 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55859.1	3.40e-47	72.97	hypothetical protein Csa_011405 [Cucumis sativus]	[more]

BLAST of IVF0023106 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023106.1	IVF0023106.1	mRNA