IVF0022798 (gene) Melon (IVF77) v1

Overview
NameIVF0022798
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr01: 6269561 .. 6269896 (+)
RNA-Seq ExpressionIVF0022798
SyntenyIVF0022798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACTGTCGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATTAACTTCATCTTCAATGTTGCTGCAGCCGAGATGATTATCTTCGTCTTCGTCTTTAAGATGGACACAACAAAGAGGATCATCTTCATCTTCGTGGGTCGTCATCTTCATCTTCAATGCAGCGCAACAGAGGCGATCATCATCTTCATCTTCAATGCAGCGCAGCTGAGATGGCCATCATCTTCATCTTCAATGCGGCACAGTCGAGACGATTATCATCTTCATCTTCCATGCGGCGCAGTTCAGACGATCATCATCTCCATCTTCAATGTAGTGTAG

mRNA sequence

ATGTGTTACTGTCGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATTAACTTCATCTTCAATGTTGCTGCAGCCGAGATGATTATCTTCGTCTTCGTCTTTAAGATGGACACAACAAAGAGGATCATCTTCATCTTCGTGGGTCGTCATCTTCATCTTCAATGCAGCGCAACAGAGGCGATCATCATCTTCATCTTCAATGCAGCGCAGCTGAGATGGCCATCATCTTCATCTTCAATGCGGCACAGTCGAGACGATTATCATCTTCATCTTCCATGCGGCGCAGTTCAGACGATCATCATCTCCATCTTCAATGTAGTGTAG

Coding sequence (CDS)

ATGTGTTACTGTCGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATTAACTTCATCTTCAATGTTGCTGCAGCCGAGATGATTATCTTCGTCTTCGTCTTTAAGATGGACACAACAAAGAGGATCATCTTCATCTTCGTGGGTCGTCATCTTCATCTTCAATGCAGCGCAACAGAGGCGATCATCATCTTCATCTTCAATGCAGCGCAGCTGAGATGGCCATCATCTTCATCTTCAATGCGGCACAGTCGAGACGATTATCATCTTCATCTTCCATGCGGCGCAGTTCAGACGATCATCATCTCCATCTTCAATGTAGTGTAG

Protein sequence

MCYCREDLHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV
Homology
BLAST of IVF0022798 vs. ExPASy TrEMBL
Match: A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 62/171 (36.26%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 3   YCREDLHLLPYVAAKRIINFIFN-----------------------------VAAAEMII 62
           + REDLH LP VA +RI  FIF+                             VAA ++ I
Sbjct: 87  HSREDLHHLPCVAVERIFIFIFSLMLQPRGSSFSSSMCCSQKDNHLHFHLQCVAAKKIFI 146

Query: 63  FVF--VFKMDTT---------------KRIIFIF------------------VGRHLHLQ 110
           F+F  VF++  +               + IIFIF                   G  LHL 
Sbjct: 147 FIFSHVFRLRGSSSSSSSLSSPICCMERIIIFIFHAAQQRRSSSSSFLRCSRDGHRLHLS 206

BLAST of IVF0022798 vs. ExPASy TrEMBL
Match: A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 54  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV 112
           HL LQ   TE II+FIFN AQ +  SSSSSM  SR+D HLHL CGA +TIII I NV+
Sbjct: 227 HLRLQHDTTERIILFIFNVAQQKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI 284

BLAST of IVF0022798 vs. ExPASy TrEMBL
Match: A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 49/120 (40.83%), Postives = 61/120 (50.83%), Query Frame = 0

Query: 1   MCYCREDLH---LLPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFV 60
           +C  +ED H    L  VAAK+II F+FNV A E IIF+FVF M       ++  +     
Sbjct: 175 ICCSQEDHHHHLHLQCVAAKKIIIFVFNVVATERIIFIFVFNMTQPRGSSSSSSMWRSRN 234

Query: 61  GRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV 112
            RHLHLQC A E III I N                  D+HLHL C A + ++I  FN V
Sbjct: 235 DRHLHLQCGAAETIIIIILNVI----------------DHHLHLQCDAAEAVVIFNFNAV 278

BLAST of IVF0022798 vs. ExPASy TrEMBL
Match: A0A5D3DYN4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 46/98 (46.94%), Postives = 56/98 (57.14%), Query Frame = 0

Query: 1   MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQ 60
           MCY RED  LHLL  V  + II FIF+            F    T   + +    HLH Q
Sbjct: 646 MCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHL----HLHFQ 705

Query: 61  CSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP 97
           CSA EA +IFIFN A+ R  SSSS M++SR+D+HLH P
Sbjct: 706 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGP 739

BLAST of IVF0022798 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 1   MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQ 60
           MCY RED  LHLL YVA + II FIF+          F     T + +       HLH Q
Sbjct: 605 MCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRGSSSFFHTCCTLEDLHL-----HLHFQ 664

Query: 61  CSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP 97
           CS  EA  ++IFIFN A+ +  SSSS MR+SR+D+HLH P
Sbjct: 665 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGP 699

BLAST of IVF0022798 vs. NCBI nr
Match: KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.02e-14
Identity = 56/136 (41.18%), Postives = 73/136 (53.68%), Query Frame = 0

Query: 1   MCYCREDLHL---LPYVAAKRIINFIFN------------------VAAAEMIIFVFVFK 60
           MC  ++D HL   L  VAAK+I  FIF+                  +   E II +F+F 
Sbjct: 123 MCCSQKDNHLHFHLQCVAAKKIFIFIFSHVFRLRGSSSSSSSLSSPICCMERII-IFIFH 182

Query: 61  MDTTKRII---FIFV---GRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHL 109
               +R     F+     G  LHL C A E +I+FIF+AAQ R  SSSS MR SRD + L
Sbjct: 183 AAQQRRSSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRDGHRL 242

BLAST of IVF0022798 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.18e-11
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 54  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV 111
           HL LQ   TE II+FIFN AQ +  SSSSSM  SR+D HLHL CGA +TIII I NV+
Sbjct: 227 HLRLQHDTTERIILFIFNVAQQKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI 284

BLAST of IVF0022798 vs. NCBI nr
Match: TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.54e-11
Identity = 49/120 (40.83%), Postives = 61/120 (50.83%), Query Frame = 0

Query: 1   MCYCREDLHL---LPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFV 60
           +C  +ED H    L  VAAK+II F+FNV A E IIF+FVF M       ++  +     
Sbjct: 175 ICCSQEDHHHHLHLQCVAAKKIIIFVFNVVATERIIFIFVFNMTQPRGSSSSSSMWRSRN 234

Query: 61  GRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV 111
            RHLHLQC A E III I N                  D+HLHL C A + ++I  FN V
Sbjct: 235 DRHLHLQCGAAETIIIIILNVI----------------DHHLHLQCDAAEAVVIFNFNAV 278

BLAST of IVF0022798 vs. NCBI nr
Match: TYK21322.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 5.11e-11
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 53  RHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN 109
            HLHL+C A EAIII IF  AQ R  SS SSM  SR  +HLHL CGAV+ IIISIF+
Sbjct: 214 HHLHLRCGAVEAIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCGAVEAIIISIFD 270

BLAST of IVF0022798 vs. NCBI nr
Match: KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 5.68e-11
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 1   MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQ 60
           MCY RED  LHLL YVA + II FIF+          F     T + +       HLH Q
Sbjct: 605 MCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRGSSSFFHTCCTLEDL-----HLHLHFQ 664

Query: 61  CSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP 96
           CS  EA  ++IFIFN A+ +  SSSS MR+SR+D+HLH P
Sbjct: 665 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGP 699

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SRV72.9e-1236.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1J11.7e-0963.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRX73.9e-0940.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DYN48.7e-0946.94Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V7A01.1e-0847.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
Match NameE-valueIdentityDescription
KAA0033278.13.02e-1441.18hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa][more]
KAA0047505.12.18e-1163.79hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa][more]
TYK26477.13.54e-1140.83hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa][more]
TYK21322.15.11e-1164.91glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0061611.15.68e-1147.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022798.1IVF0022798.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane